Package: MLInterfaces

Version: 1.39.1

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings MLInterfaces_1.39.1.tar.gz

StartedAt: 2013-01-16 04:25:41 -0800 (Wed, 16 Jan 2013)

EndedAt: 2013-01-16 04:34:09 -0800 (Wed, 16 Jan 2013)

EllapsedTime: 507.7 seconds

RetCode: 0

Status:  OK

CheckDir: MLInterfaces.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.12-bioc/meat/MLInterfaces.Rcheck’
* using R Under development (unstable) (2012-12-17 r61365)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MLInterfaces/DESCRIPTION’ ... OK
* this is package ‘MLInterfaces’ version ‘1.39.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MLInterfaces’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘multicore’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                           user system elapsed
MLearn-new               19.549  1.656  51.275
predict.classifierOutput  3.453  0.052   7.786
planarPlot-methods        2.460  0.200   5.828
varImpStruct-class        0.792  0.060   6.349
classifierOutput-class    0.464  0.252   6.114
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/loc/home/biocbuild/bbs-2.12-bioc/meat/MLInterfaces.Rcheck/00check.log’
for details.

* installing *source* package ‘MLInterfaces’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘MLInterfaces.Rnw’ 
   ‘MLint_devel.Rnw’ 
   ‘MLprac2_2.Rnw’ 
   ‘xvalComputerClusters.Rnw’ 
** testing if installed package can be loaded

* DONE (MLInterfaces)

name	user	system	elapsed
MLearn-new	19.549	1.656	51.275
RAB	0.148	0.004	0.981
balKfold.xvspec	0.028	0.032	0.363
classifierOutput-class	0.464	0.252	6.114
clusteringOutput-class	0.008	0.040	0.049
confuMat-methods	0.268	0.052	3.348
fs.absT	0.032	0.016	0.047
fsHistory	3.928	0.760	1.053
learnerSchema-class	0.000	0.008	0.007
planarPlot-methods	2.460	0.200	5.828
predict.classifierOutput	3.453	0.052	7.786
raboostCont-class	0.004	0.000	0.004
varImpStruct-class	0.792	0.060	6.349
xvalLoop	0.020	0.000	0.023
xvalSpec	0.112	0.128	4.850