Package: GENE.E

Version: 1.1.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch GENE.E_1.1.0.tar.gz

StartedAt: 2013-04-11 07:41:37 -0700 (Thu, 11 Apr 2013)

EndedAt: 2013-04-11 07:42:16 -0700 (Thu, 11 Apr 2013)

EllapsedTime: 38.8 seconds

RetCode: 1

Status:  ERROR

CheckDir: GENE.E.Rcheck

Warnings: NA

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/GENE.E.Rcheck'
* using R version 3.0.0 Patched (2013-04-08 r62531)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'GENE.E/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GENE.E' version '1.1.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'GENE.E' can be installed ... [3s/3s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [2s/2s] OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'runTests.R' [2s/4s]
 ERROR
Running the tests in 'tests/runTests.R' failed.
Last 13 lines of output:
  1 Test Suite : 
  GENE.E RUnit Tests - 1 test function, 1 error, 0 failures
  ERROR in /Users/biocbuild/bbs-2.12-bioc/meat/GENE.E.Rcheck/GENE.E/unitTests/test_io.R: Error while sourcing  /Users/biocbuild/bbs-2.12-bioc/meat/GENE.E.Rcheck/GENE.E/unitTests/test_io.R : Error in function (type, msg, asError = TRUE)  : couldn't connect to host
  
  Test files with failing tests
  
     test_io.R 
       /Users/biocbuild/bbs-2.12-bioc/meat/GENE.E.Rcheck/GENE.E/unitTests/test_io.R 
  
  
  Error in BiocGenerics:::testPackage("GENE.E") : 
    unit tests failed for package GENE.E
  Execution halted

* installing *source* package 'GENE.E' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GENE.E)

name	user	system	elapsed
from.genee	0.010	0.001	0.011
to.genee	0.012	0.000	0.013