>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=EBImage.buildbin-libdir EBImage_4.2.1.tar.gz'
>>>>>>>
* installing *source* package 'EBImage' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c EBImage.c -o EBImage.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c distmap.c -o distmap.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c drawCircle.c -o drawCircle.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c floodFill.cpp -o floodFill.o
In file included from floodFill.cpp:1:
./floodFill.h:16:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from floodFill.cpp:2:
./tools.h:37:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
2 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c greyscale_morphology.c -o greyscale_morphology.o
greyscale_morphology.c:136:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
CHECK_BUFFER(set.R, set.RLength, RBufLength, int)
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
greyscale_morphology.c:23:34: note: expanded from macro 'CHECK_BUFFER'
pointer = R_Realloc(pointer, buffer, type);\
^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:67:70: note: expanded from macro 'R_Realloc'
#define R_Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
^
greyscale_morphology.c:142:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
CHECK_BUFFER(set.C, set.CLength, CBufLength, chord)
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
greyscale_morphology.c:23:34: note: expanded from macro 'CHECK_BUFFER'
pointer = R_Realloc(pointer, buffer, type);\
^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:67:70: note: expanded from macro 'R_Realloc'
#define R_Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
^
greyscale_morphology.c:157:25: warning: implicit conversion turns floating-point number into integer: 'numeric' (aka 'double') to 'int' [-Wconversion]
prevValue = kern[index];
˜ ^˜˜˜˜˜˜˜˜˜˜
greyscale_morphology.c:168:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
CHECK_BUFFER(set.R, set.RLength, RBufLength, int)
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
greyscale_morphology.c:23:34: note: expanded from macro 'CHECK_BUFFER'
pointer = R_Realloc(pointer, buffer, type);\
^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:67:70: note: expanded from macro 'R_Realloc'
#define R_Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
^
greyscale_morphology.c:178:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
CHECK_BUFFER(set.R, set.RLength, RBufLength, int)
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
greyscale_morphology.c:23:34: note: expanded from macro 'CHECK_BUFFER'
pointer = R_Realloc(pointer, buffer, type);\
^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:67:70: note: expanded from macro 'R_Realloc'
#define R_Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
^
5 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c haralick.c -o haralick.o
haralick.c:45:40: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
if ( data[index] > nobj ) nobj = floor( data[index] );
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
haralick.c:69:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
ncomp = (int *) R_alloc (nobj, sizeof(int) );
˜˜˜˜˜˜˜ ^˜˜˜
haralick.c:76:17: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
index = floor( data[x + y * nx] ); /* index of the object, R-style = 1-based */
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
haralick.c:80:19: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
colthis = floor(refdata[x + y * nx] * (nc - 1));
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
haralick.c:83:21: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
colthat = floor(refdata[x+1 + y * nx] * (nc - 1));
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
haralick.c:89:21: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
colthat = floor(refdata[x + (y+1) * nx] * (nc - 1));
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
haralick.c:95:21: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
colthat = floor(refdata[x+1 + (y+1) * nx] * (nc - 1));
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
haralick.c:101:21: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
colthat = floor(refdata[x-1 + (y+1) * nx] * (nc - 1));
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
haralick.c:170:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
px = (double *) R_alloc (nc, sizeof(double) );
˜˜˜˜˜˜˜ ^˜
haralick.c:171:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
Pxpy = (double *) R_alloc(2 * nc + 10, sizeof(double) ); // +10 is to be safe with limits
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜^˜˜˜
haralick.c:172:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
Pxmy = (double *) R_alloc(2 * nc + 10, sizeof(double) ); // +10 is to be safe with limits
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜^˜˜˜
11 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c medianFilter.c -o medianFilter.o
medianFilter.c:240:66: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
h_coarse = (uint16_t*) _mm_malloc( 1 * SQRT_BUCKET_SIZE * n * cn * sizeof(uint16_t), 16 );
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
medianFilter.c:241:80: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
h_fine = (uint16_t*) _mm_malloc( SQRT_BUCKET_SIZE * SQRT_BUCKET_SIZE * n * cn * sizeof(uint16_t), 16 );
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
medianFilter.c:242:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset( h_coarse, 0, 1 * SQRT_BUCKET_SIZE * n * cn * sizeof(uint16_t) );
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
medianFilter.c:242:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset( h_coarse, 0, 1 * SQRT_BUCKET_SIZE * n * cn * sizeof(uint16_t) );
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
medianFilter.c:243:66: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset( h_fine, 0, SQRT_BUCKET_SIZE * SQRT_BUCKET_SIZE * n * cn * sizeof(uint16_t) );
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
medianFilter.c:243:66: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset( h_fine, 0, SQRT_BUCKET_SIZE * SQRT_BUCKET_SIZE * n * cn * sizeof(uint16_t) );
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
medianFilter.c:283:23: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
memset( H, 0, cn*sizeof(H[0]) );
^˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
medianFilter.c:283:23: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
memset( H, 0, cn*sizeof(H[0]) );
^˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
medianFilter.c:284:25: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
memset( luc, 0, cn*sizeof(luc[0]) );
^˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
medianFilter.c:284:25: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
memset( luc, 0, cn*sizeof(luc[0]) );
^˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
medianFilter.c:287:35: warning: implicit conversion loses integer precision: 'const int' to 'uint16_t' (aka 'unsigned short') [-Wconversion]
histogram_muladd( r, &h_coarse[SQRT_BUCKET_SIZE*n*c], H[c].coarse );
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
medianFilter.c:297:38: warning: implicit conversion loses integer precision: 'int' to 'uint16_t' (aka 'unsigned short') [-Wconversion]
histogram_muladd( 2*r+1, &h_fine[SQRT_BUCKET_SIZE*n*(SQRT_BUCKET_SIZE*c+k)], &H[c].fine[k][0] );
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜^˜
medianFilter.c:303:42: warning: implicit conversion loses integer precision: 'int' to 'uint16_t' (aka 'unsigned short') [-Wconversion]
const uint16_t t = 2*r*r + 2*r;
˜ ˜˜˜˜˜˜^˜˜˜˜
medianFilter.c:322:40: warning: implicit conversion loses integer precision: 'int' to 'uint16_t' (aka 'unsigned short') [-Wconversion]
for ( luc[c][k] = j-r; luc[c][k] < MIN(j+r+1,n); ++luc[c][k] ) {
˜ ˜^˜
medianFilter.c:326:49: warning: implicit conversion loses integer precision: 'int' to 'uint16_t' (aka 'unsigned short') [-Wconversion]
histogram_muladd( j+r+1 - n, &h_fine[SQRT_BUCKET_SIZE*(n*(SQRT_BUCKET_SIZE*c+k)+(n-1))], &H[c].fine[k][0] );
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜^˜˜
medianFilter.c:327:40: warning: implicit conversion loses integer precision: 'int' to 'uint16_t' (aka 'unsigned short') [-Wconversion]
luc[c][k] = j+r+1;
˜ ˜˜˜^˜
medianFilter.c:344:69: warning: implicit conversion loses integer precision: 'int' to 'uint16_t' (aka 'unsigned short') [-Wconversion]
dst[dst_step*i+cn*j+c] = SQRT_BUCKET_SIZE*k + b;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
medianFilter.c:436:88: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
int stripes = (int) ceil( (double) (width - 2*r) / (memsize / sizeof(Histogram) - 2*r) );
˜ ˜^˜
medianFilter.c:474:41: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
px = (uint16_t *) R_alloc(size.x*size.y*(*cn), sizeof(uint16_t));
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜
medianFilter.c:475:41: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
py = (uint16_t *) R_alloc(size.x*size.y*(*cn), sizeof(uint16_t));
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜
medianFilter.c:479:78: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
ctmf(px, py, size.x, size.y, size.x*(*cn), size.x*(*cn), *r, *cn, (*memsize)*1024);
˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
21 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c morphology.c -o morphology.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c normalize.c -o normalize.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c objects.c -o objects.o
objects.c:102:42: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
if ( data[i] > nobj ) nobj = data[i];
˜ ^˜˜˜˜˜˜
objects.c:142:13: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
int ext = floor(REAL(extension)[0]);
˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
objects.c:173:62: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
for (i = 0; i < nx * ny; i++) if (dobj[i] > nobj) nobj = dobj[i];
˜ ^˜˜˜˜˜˜
objects.c:240:29: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
index = dobj[x + y * nx] - 1; // background index 0 is not kept
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
objects.c:249:15: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
pxi = xx + yy * snx;
˜ ˜˜˜^˜˜˜˜˜˜˜˜˜
5 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c ocontour.c -o ocontour.o
ocontour.c:82:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memcpy(INTEGER(_oc), octemp, nboc*2*sizeof(int));
˜˜˜˜^˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest)) \
^
ocontour.c:82:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memcpy(INTEGER(_oc), octemp, nboc*2*sizeof(int));
˜˜˜˜^˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
: __inline_memcpy_chk (dest, src, len))
^
2 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c propagate.cpp -o propagate.o
In file included from propagate.cpp:32:
./propagate.h:14:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from propagate.cpp:34:
./tools.h:37:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
propagate.cpp:81:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pixel_diff += fabs(clamped_fetch(image, i1 + delta_i, j1 + delta_j, m, n) -
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
propagate.cpp:81:78: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pixel_diff += fabs(clamped_fetch(image, i1 + delta_i, j1 + delta_j, m, n) -
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
propagate.cpp:82:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
clamped_fetch(image, i2 + delta_i, j2 + delta_j, m, n));
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
propagate.cpp:82:78: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
clamped_fetch(image, i2 + delta_i, j2 + delta_j, m, n));
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
propagate.cpp:104:46: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i-1, j, m, n, lambda), i-1, j, label));
˜˜˜˜˜˜˜˜˜˜ ^
propagate.cpp:104:49: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i-1, j, m, n, lambda), i-1, j, label));
˜˜˜˜˜˜˜˜˜˜ ^
propagate.cpp:104:53: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i-1, j, m, n, lambda), i-1, j, label));
˜˜˜˜˜˜˜˜˜˜ ˜^˜
propagate.cpp:104:57: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i-1, j, m, n, lambda), i-1, j, label));
˜˜˜˜˜˜˜˜˜˜ ^
propagate.cpp:108:46: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i, j-1, m, n, lambda), i, j-1, label));
˜˜˜˜˜˜˜˜˜˜ ^
propagate.cpp:108:49: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i, j-1, m, n, lambda), i, j-1, label));
˜˜˜˜˜˜˜˜˜˜ ^
propagate.cpp:108:52: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i, j-1, m, n, lambda), i, j-1, label));
˜˜˜˜˜˜˜˜˜˜ ^
propagate.cpp:108:56: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i, j-1, m, n, lambda), i, j-1, label));
˜˜˜˜˜˜˜˜˜˜ ˜^˜
propagate.cpp:112:46: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i+1, j, m, n, lambda), i+1, j, label));
˜˜˜˜˜˜˜˜˜˜ ^
propagate.cpp:112:49: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i+1, j, m, n, lambda), i+1, j, label));
˜˜˜˜˜˜˜˜˜˜ ^
propagate.cpp:112:53: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i+1, j, m, n, lambda), i+1, j, label));
˜˜˜˜˜˜˜˜˜˜ ˜^˜
propagate.cpp:112:57: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i+1, j, m, n, lambda), i+1, j, label));
˜˜˜˜˜˜˜˜˜˜ ^
propagate.cpp:116:46: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i, j+1, m, n, lambda), i, j+1, label));
˜˜˜˜˜˜˜˜˜˜ ^
propagate.cpp:116:49: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i, j+1, m, n, lambda), i, j+1, label));
˜˜˜˜˜˜˜˜˜˜ ^
propagate.cpp:116:52: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i, j+1, m, n, lambda), i, j+1, label));
˜˜˜˜˜˜˜˜˜˜ ^
propagate.cpp:116:56: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i, j+1, m, n, lambda), i, j+1, label));
˜˜˜˜˜˜˜˜˜˜ ˜^˜
propagate.cpp:122:46: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i-1, j-1, m, n, lambda), i-1, j-1, label));
˜˜˜˜˜˜˜˜˜˜ ^
propagate.cpp:122:49: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i-1, j-1, m, n, lambda), i-1, j-1, label));
˜˜˜˜˜˜˜˜˜˜ ^
propagate.cpp:122:53: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i-1, j-1, m, n, lambda), i-1, j-1, label));
˜˜˜˜˜˜˜˜˜˜ ˜^˜
propagate.cpp:122:58: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i-1, j-1, m, n, lambda), i-1, j-1, label));
˜˜˜˜˜˜˜˜˜˜ ˜^˜
propagate.cpp:126:46: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i+1, j-1, m, n, lambda), i+1, j-1, label));
˜˜˜˜˜˜˜˜˜˜ ^
propagate.cpp:126:49: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i+1, j-1, m, n, lambda), i+1, j-1, label));
˜˜˜˜˜˜˜˜˜˜ ^
propagate.cpp:126:53: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i+1, j-1, m, n, lambda), i+1, j-1, label));
˜˜˜˜˜˜˜˜˜˜ ˜^˜
propagate.cpp:126:58: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i+1, j-1, m, n, lambda), i+1, j-1, label));
˜˜˜˜˜˜˜˜˜˜ ˜^˜
propagate.cpp:130:46: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i-1, j+1, m, n, lambda), i-1, j+1, label));
˜˜˜˜˜˜˜˜˜˜ ^
propagate.cpp:130:49: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i-1, j+1, m, n, lambda), i-1, j+1, label));
˜˜˜˜˜˜˜˜˜˜ ^
propagate.cpp:130:53: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i-1, j+1, m, n, lambda), i-1, j+1, label));
˜˜˜˜˜˜˜˜˜˜ ˜^˜
propagate.cpp:130:58: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i-1, j+1, m, n, lambda), i-1, j+1, label));
˜˜˜˜˜˜˜˜˜˜ ˜^˜
propagate.cpp:134:46: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i+1, j+1, m, n, lambda), i+1, j+1, label));
˜˜˜˜˜˜˜˜˜˜ ^
propagate.cpp:134:49: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i+1, j+1, m, n, lambda), i+1, j+1, label));
˜˜˜˜˜˜˜˜˜˜ ^
propagate.cpp:134:53: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i+1, j+1, m, n, lambda), i+1, j+1, label));
˜˜˜˜˜˜˜˜˜˜ ˜^˜
propagate.cpp:134:58: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
pq.push(Pixel(dist + Difference(image, i, j, i+1, j+1, m, n, lambda), i+1, j+1, label));
˜˜˜˜˜˜˜˜˜˜ ˜^˜
propagate.cpp:209:45: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
_propagate(seeds, x, imask, tgt, dists, nx, ny, lambda);
˜˜˜˜˜˜˜˜˜˜ ^˜
propagate.cpp:209:49: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
_propagate(seeds, x, imask, tgt, dists, nx, ny, lambda);
˜˜˜˜˜˜˜˜˜˜ ^˜
40 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c spatial.c -o spatial.o
spatial.c:46:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
int ftx = floor(tx);
˜˜˜ ^˜˜˜˜˜˜˜˜
spatial.c:47:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
int fty = floor(ty);
˜˜˜ ^˜˜˜˜˜˜˜˜
2 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c thresh.c -o thresh.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c tile.c -o tile.o
tile.c:38:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
ndy = ceil( nz * onetondx ); // number of tiles in y-dir
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
tile.c:78:54: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
y = lwd + floor(index * onetondx) * (ny + lwd) + j;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
tile.c:79:15: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
x = lwd + (index - floor(index * onetondx) * ndx) * (nx + lwd);
˜ ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
tile.c:85:91: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
if (oredstride!=-1) memcpy( &(dim[i+rredstride]), &(REAL(obj)[j* nx+oredstride]), nx * sizeof(double));
^˜ ˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest)) \
^
tile.c:85:91: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
if (oredstride!=-1) memcpy( &(dim[i+rredstride]), &(REAL(obj)[j* nx+oredstride]), nx * sizeof(double));
^˜ ˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
: __inline_memcpy_chk (dest, src, len))
^
tile.c:86:95: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
if (ogreenstride!=-1) memcpy( &(dim[i+rgreenstride]), &(REAL(obj)[j* nx+ogreenstride]), nx * sizeof(double));
^˜ ˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest)) \
^
tile.c:86:95: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
if (ogreenstride!=-1) memcpy( &(dim[i+rgreenstride]), &(REAL(obj)[j* nx+ogreenstride]), nx * sizeof(double));
^˜ ˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
: __inline_memcpy_chk (dest, src, len))
^
tile.c:87:93: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
if (obluestride!=-1) memcpy( &(dim[i+rbluestride]), &(REAL(obj)[j* nx+obluestride]), nx * sizeof(double));
^˜ ˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest)) \
^
tile.c:87:93: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
if (obluestride!=-1) memcpy( &(dim[i+rbluestride]), &(REAL(obj)[j* nx+obluestride]), nx * sizeof(double));
^˜ ˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
: __inline_memcpy_chk (dest, src, len))
^
tile.c:175:19: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memcpy(tgt, src, nx*sizeof(double));
^˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest)) \
^
tile.c:175:19: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memcpy(tgt, src, nx*sizeof(double));
^˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
: __inline_memcpy_chk (dest, src, len))
^
tile.c:180:19: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memcpy(tgt, src, nx*sizeof(double));
^˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest)) \
^
tile.c:180:19: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memcpy(tgt, src, nx*sizeof(double));
^˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
: __inline_memcpy_chk (dest, src, len))
^
tile.c:185:19: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memcpy(tgt, src, nx*sizeof(double));
^˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest)) \
^
tile.c:185:19: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memcpy(tgt, src, nx*sizeof(double));
^˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
: __inline_memcpy_chk (dest, src, len))
^
tile.c:129:37: warning: unused variable 'id' [-Wunused-variable]
void *src, *tgt; double *dd; int *id;
^
16 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c tools.c -o tools.o
tools.c:8:19: warning: implicit conversion loses floating-point precision: 'long double' to 'double' [-Wconversion]
return sqrt ( (long double)( (pt1.x - pt2.x) * (pt1.x - pt2.x) + (pt1.y - pt2.y) * (pt1.y - pt2.y) ) );
˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
tools.c:14:19: warning: implicit conversion loses floating-point precision: 'long double' to 'double' [-Wconversion]
return sqrt ( (long double)( (x1 - x2) * (x1 - x2) + (y1 - y2) * (y1 - y2) ) );
˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
tools.c:21:13: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
res.y = floor (index / xsize);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
3 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c watershed.cpp -o watershed.o
In file included from watershed.cpp:1:
./watershed.h:14:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from watershed.cpp:9:
./tools.h:37:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
2 warnings generated.
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o EBImage.so EBImage.o distmap.o drawCircle.o floodFill.o greyscale_morphology.o haralick.o medianFilter.o morphology.o normalize.o objects.o ocontour.o propagate.o spatial.o thresh.o tile.o tools.o watershed.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/EBImage.buildbin-libdir/EBImage/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (EBImage)
>>>>>>>
>>>>>>> FIXING LINKS FOR EBImage.buildbin-libdir/EBImage/libs//EBImage.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "EBImage.buildbin-libdir/EBImage/libs//EBImage.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "EBImage.buildbin-libdir/EBImage/libs//EBImage.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "EBImage.buildbin-libdir/EBImage/libs//EBImage.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "EBImage.buildbin-libdir/EBImage/libs//EBImage.so"