CNVtools 1.54.0
Chris Barnes
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/CNVtools | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | WARNINGS | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | WARNINGS | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | [ WARNINGS ] | OK |
* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/CNVtools.Rcheck'
* using R version 3.0.0 Patched (2013-04-08 r62531)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'CNVtools/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CNVtools' version '1.54.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'CNVtools' can be installed ... [5s/5s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... WARNING
File '/Users/biocbuild/bbs-2.12-bioc/meat/CNVtools.Rcheck/CNVtools/libs/CNVtools.so':
Found '__ZSt4cerr', possibly from 'std::cerr' (C++)
Objects: 'fitmodel.o', 'routine.o'
Found '__ZSt4cout', possibly from 'std::cout' (C++)
Object: 'fitmodel.o'
Found '_exit', possibly from 'exit' (C)
Objects: 'fitmodel.o', 'routine.o'
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking installed files from 'inst/doc' ... OK
* checking examples ... [149s/152s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
CNVtest.select.model 85.527 0.607 88.196
CNVtest.binary 17.327 0.159 17.682
cnv.plot 16.728 0.146 17.332
qt.plot 13.994 0.123 14.282
CNVtest.qt 13.891 0.103 14.175
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
WARNING: There was 1 warning.
See
'/Users/biocbuild/bbs-2.12-bioc/meat/CNVtools.Rcheck/00check.log'
for details.
* installing *source* package 'CNVtools' ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c fitmodel.cpp -o fitmodel.o
In file included from fitmodel.cpp:2:
./fitmodel.h:161:18: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return(index[i1] < index[i2]);
˜˜˜˜˜ ^˜
./fitmodel.h:161:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return(index[i1] < index[i2]);
˜˜˜˜˜ ^˜
./fitmodel.h:166:53: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (int i = 0; i != (int) index.size(); i++) w[i] = i;
˜ ^
fitmodel.cpp:17:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
ret.assign(length*7, 0.);
˜˜˜ ˜˜˜˜˜˜^˜
fitmodel.cpp:20:12: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
ret[ i + 0*length ] = posterior[i];
˜˜˜ ˜˜^˜˜˜˜˜˜˜˜˜
fitmodel.cpp:21:12: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
ret[ i + 1*length] = mean[i];
˜˜˜ ˜˜^˜˜˜˜˜˜˜˜˜
fitmodel.cpp:22:12: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
ret[ i + 2*length] = variance[i];
˜˜˜ ˜˜^˜˜˜˜˜˜˜˜˜
fitmodel.cpp:23:12: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
ret[ i + 3*length] = logp[i];
˜˜˜ ˜˜^˜˜˜˜˜˜˜˜˜
fitmodel.cpp:24:12: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
ret[ i + 4*length] = alpha[i];
˜˜˜ ˜˜^˜˜˜˜˜˜˜˜˜
fitmodel.cpp:25:12: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
ret[ i + 5*length] = proba_disease[i];
˜˜˜ ˜˜^˜˜˜˜˜˜˜˜˜
fitmodel.cpp:26:12: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
ret[ i + 6*length] = nu[i];
˜˜˜ ˜˜^˜˜˜˜˜˜˜˜˜
fitmodel.cpp:60:14: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
alphas[i][j] = 0.;
˜˜˜˜˜˜ ^
fitmodel.cpp:60:17: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
alphas[i][j] = 0.;
˜˜˜˜˜˜ ^
fitmodel.cpp:66:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
alphas[ cohort[i] - 1 ][ cn[i] ] += posterior[i];
˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:66:32: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
alphas[ cohort[i] - 1 ][ cn[i] ] += posterior[i];
˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:69:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
vector<double> n(ncohorts,0.);
˜ ^˜˜˜˜˜˜˜
fitmodel.cpp:72:4: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
n[i] += alphas[i][j];
˜ ^
fitmodel.cpp:72:17: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
n[i] += alphas[i][j];
˜˜˜˜˜˜ ^
fitmodel.cpp:72:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
n[i] += alphas[i][j];
˜˜˜˜˜˜ ^
fitmodel.cpp:77:9: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
alphas[i][j] /= n[i];
˜˜˜˜˜˜ ^
fitmodel.cpp:77:12: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
alphas[i][j] /= n[i];
˜˜˜˜˜˜ ^
fitmodel.cpp:77:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
alphas[i][j] /= n[i];
˜ ^
fitmodel.cpp:78:13: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (alphas[i][j] < min_n/nind) alphas[i][j] = 0.; //I want at least min_n individuals per group
˜˜˜˜˜˜ ^
fitmodel.cpp:78:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (alphas[i][j] < min_n/nind) alphas[i][j] = 0.; //I want at least min_n individuals per group
˜˜˜˜˜˜ ^
fitmodel.cpp:78:40: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (alphas[i][j] < min_n/nind) alphas[i][j] = 0.; //I want at least min_n individuals per group
˜˜˜˜˜˜ ^
fitmodel.cpp:78:43: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (alphas[i][j] < min_n/nind) alphas[i][j] = 0.; //I want at least min_n individuals per group
˜˜˜˜˜˜ ^
fitmodel.cpp:81:68: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (int i = 0; i != length; i++) alpha[i] = alphas[ cohort[i] - 1 ][ cn[i] ];
˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:81:75: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (int i = 0; i != length; i++) alpha[i] = alphas[ cohort[i] - 1 ][ cn[i] ];
˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:86:18: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
alphas[0][ cn[i] ] += posterior[i];
˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:90:56: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (int i = 0; i != ncomp; i++) sum += alphas[0][i];
˜˜˜˜˜˜ ^
fitmodel.cpp:92:17: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
alphas[0][i] /= sum;
˜˜˜˜˜˜ ^
fitmodel.cpp:93:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (alphas[0][i] < min_n/nind) alphas[0][i] = 0.; //I want at least min_n individuals per group
˜˜˜˜˜˜ ^
fitmodel.cpp:93:48: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (alphas[0][i] < min_n/nind) alphas[0][i] = 0.; //I want at least min_n individuals per group
˜˜˜˜˜˜ ^
fitmodel.cpp:95:61: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (int i = 0; i != length; i++) alpha[i] = alphas[0][ cn[i] ];
˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:297:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
vector<vector<double> > n(ncohorts, vector<double>(ncomp, 0 ));
˜ ^˜˜˜˜˜˜˜
fitmodel.cpp:301:54: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (int i = 0; i != length; i++) means[ cohort[i] - 1][ cn[i] ] = mean[i];
˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:301:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (int i = 0; i != length; i++) means[ cohort[i] - 1][ cn[i] ] = mean[i];
˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:306:17: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variances[i][j] = 0;
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:306:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variances[i][j] = 0;
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:312:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
n[ 0 ][ cn[i] ] += posterior[i];
˜ ^˜˜˜˜
fitmodel.cpp:313:49: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double res = signal[i] - means[ cohort[i] - 1 ][ cn[i] ];
˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:313:56: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double res = signal[i] - means[ cohort[i] - 1 ][ cn[i] ];
˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:314:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variances[ 0 ][ cn[i] ] += posterior[i]*res*res;
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:317:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
n[ cohort[i] - 1][ cn[i] ] += posterior[i];
˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:317:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
n[ cohort[i] - 1][ cn[i] ] += posterior[i];
˜ ^˜˜˜˜
fitmodel.cpp:318:49: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double res = signal[i] - means[ cohort[i] - 1 ][ cn[i] ];
˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:318:56: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double res = signal[i] - means[ cohort[i] - 1 ][ cn[i] ];
˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:319:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variances[ cohort[i] - 1][ cn[i] ] += posterior[i]*res*res;
˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:319:34: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variances[ cohort[i] - 1][ cn[i] ] += posterior[i]*res*res;
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:327:27: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
temp += shrinkage*n[ 0 ][j]*(means[i][j] - mean_p)*(means[i][j] - mean_p)/(shrinkage + n[ 0 ][j]);
˜ ^
fitmodel.cpp:327:37: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
temp += shrinkage*n[ 0 ][j]*(means[i][j] - mean_p)*(means[i][j] - mean_p)/(shrinkage + n[ 0 ][j]);
˜˜˜˜˜ ^
fitmodel.cpp:327:40: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
temp += shrinkage*n[ 0 ][j]*(means[i][j] - mean_p)*(means[i][j] - mean_p)/(shrinkage + n[ 0 ][j]);
˜˜˜˜˜ ^
fitmodel.cpp:327:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
temp += shrinkage*n[ 0 ][j]*(means[i][j] - mean_p)*(means[i][j] - mean_p)/(shrinkage + n[ 0 ][j]);
˜˜˜˜˜ ^
fitmodel.cpp:327:63: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
temp += shrinkage*n[ 0 ][j]*(means[i][j] - mean_p)*(means[i][j] - mean_p)/(shrinkage + n[ 0 ][j]);
˜˜˜˜˜ ^
fitmodel.cpp:327:96: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
temp += shrinkage*n[ 0 ][j]*(means[i][j] - mean_p)*(means[i][j] - mean_p)/(shrinkage + n[ 0 ][j]);
˜ ^
fitmodel.cpp:329:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variances[ 0 ][j] = (scale + temp + variances[ 0 ][j])/( dof + n[ 0 ][j] + 3 );
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:329:58: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variances[ 0 ][j] = (scale + temp + variances[ 0 ][j])/( dof + n[ 0 ][j] + 3 );
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:329:77: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variances[ 0 ][j] = (scale + temp + variances[ 0 ][j])/( dof + n[ 0 ][j] + 3 );
˜ ^
fitmodel.cpp:336:36: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double temp = scale + shrinkage*n[i][j]*(means[i][j] - mean_p)*(means[i][j] - mean_p)/(shrinkage + n[i][j]) + variances[i][j];
˜ ^
fitmodel.cpp:336:39: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double temp = scale + shrinkage*n[i][j]*(means[i][j] - mean_p)*(means[i][j] - mean_p)/(shrinkage + n[i][j]) + variances[i][j];
˜ ^
fitmodel.cpp:336:49: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double temp = scale + shrinkage*n[i][j]*(means[i][j] - mean_p)*(means[i][j] - mean_p)/(shrinkage + n[i][j]) + variances[i][j];
˜˜˜˜˜ ^
fitmodel.cpp:336:52: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double temp = scale + shrinkage*n[i][j]*(means[i][j] - mean_p)*(means[i][j] - mean_p)/(shrinkage + n[i][j]) + variances[i][j];
˜˜˜˜˜ ^
fitmodel.cpp:336:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double temp = scale + shrinkage*n[i][j]*(means[i][j] - mean_p)*(means[i][j] - mean_p)/(shrinkage + n[i][j]) + variances[i][j];
˜˜˜˜˜ ^
fitmodel.cpp:336:75: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double temp = scale + shrinkage*n[i][j]*(means[i][j] - mean_p)*(means[i][j] - mean_p)/(shrinkage + n[i][j]) + variances[i][j];
˜˜˜˜˜ ^
fitmodel.cpp:336:103: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double temp = scale + shrinkage*n[i][j]*(means[i][j] - mean_p)*(means[i][j] - mean_p)/(shrinkage + n[i][j]) + variances[i][j];
˜ ^
fitmodel.cpp:336:106: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double temp = scale + shrinkage*n[i][j]*(means[i][j] - mean_p)*(means[i][j] - mean_p)/(shrinkage + n[i][j]) + variances[i][j];
˜ ^
fitmodel.cpp:336:122: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double temp = scale + shrinkage*n[i][j]*(means[i][j] - mean_p)*(means[i][j] - mean_p)/(shrinkage + n[i][j]) + variances[i][j];
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:336:125: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double temp = scale + shrinkage*n[i][j]*(means[i][j] - mean_p)*(means[i][j] - mean_p)/(shrinkage + n[i][j]) + variances[i][j];
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:337:12: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variances[i][j] = temp/( dof + n[i][j] + 3 );
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:337:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variances[i][j] = temp/( dof + n[i][j] + 3 );
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:337:35: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variances[i][j] = temp/( dof + n[i][j] + 3 );
˜ ^
fitmodel.cpp:337:38: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variances[i][j] = temp/( dof + n[i][j] + 3 );
˜ ^
fitmodel.cpp:345:69: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (int i = 0; i != length; i++) variance[i] = variances[ 0 ][ cn[i] ];
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:348:74: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (int i = 0; i != length; i++) variance[i] = variances[ cohort[i] - 1][ cn[i] ];
˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:348:80: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (int i = 0; i != length; i++) variance[i] = variances[ cohort[i] - 1][ cn[i] ];
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:357:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
vector<vector<double> > n(ncohorts, vector<double>(ncomp, 0 ));
˜ ^˜˜˜˜˜˜˜
fitmodel.cpp:362:13: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
means[i][j] = 0;
˜˜˜˜˜ ^
fitmodel.cpp:362:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
means[i][j] = 0;
˜˜˜˜˜ ^
fitmodel.cpp:367:18: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
n[ cohort[i] - 1][ cn[i] ] += posterior[i];
˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:367:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
n[ cohort[i] - 1][ cn[i] ] += posterior[i];
˜ ^˜˜˜˜
fitmodel.cpp:368:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
means[ cohort[i] - 1][ cn[i] ] += posterior[i]*signal[i];
˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:368:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
means[ cohort[i] - 1][ cn[i] ] += posterior[i]*signal[i];
˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:373:13: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
means[i][j] = (means[i][j] + shrinkage*mean_p)/( n[i][j] + shrinkage );
˜˜˜˜˜ ^
fitmodel.cpp:373:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
means[i][j] = (means[i][j] + shrinkage*mean_p)/( n[i][j] + shrinkage );
˜˜˜˜˜ ^
fitmodel.cpp:373:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
means[i][j] = (means[i][j] + shrinkage*mean_p)/( n[i][j] + shrinkage );
˜˜˜˜˜ ^
fitmodel.cpp:373:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
means[i][j] = (means[i][j] + shrinkage*mean_p)/( n[i][j] + shrinkage );
˜˜˜˜˜ ^
fitmodel.cpp:373:58: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
means[i][j] = (means[i][j] + shrinkage*mean_p)/( n[i][j] + shrinkage );
˜ ^
fitmodel.cpp:373:61: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
means[i][j] = (means[i][j] + shrinkage*mean_p)/( n[i][j] + shrinkage );
˜ ^
fitmodel.cpp:378:64: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (int i = 0; i != length; i++) mean[i] = means[ cohort[i] - 1][ cn[i] ];
˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:378:70: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (int i = 0; i != length; i++) mean[i] = means[ cohort[i] - 1][ cn[i] ];
˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:416:24: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
double p_disease = disease_status[i] ? proba_disease[i] : 1. - proba_disease[i];
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fitmodel.cpp:466:26: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
double p_disease = disease_status[i] ? proba_disease[i] : 1. - proba_disease[i];
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fitmodel.cpp:496:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
vector<vector<double> > n(ncohorts, vector<double>(ncomp, 0 ));
˜ ^˜˜˜˜˜˜˜
fitmodel.cpp:501:13: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
means[i][j] = 0;
˜˜˜˜˜ ^
fitmodel.cpp:501:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
means[i][j] = 0;
˜˜˜˜˜ ^
fitmodel.cpp:509:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
n[ 0 ][ cn[i] ] += posterior[i]*u[i];
˜ ^˜˜˜˜
fitmodel.cpp:510:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
means[ 0 ][ cn[i] ] += posterior[i]*u[i]*signal[i];
˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:514:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[0][j] > 0) means[ 0 ][j] /= n[ 0 ][j]; else means[0][j] = -99.;
˜ ^
fitmodel.cpp:514:35: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[0][j] > 0) means[ 0 ][j] /= n[ 0 ][j]; else means[0][j] = -99.;
˜˜˜˜˜ ^
fitmodel.cpp:514:48: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[0][j] > 0) means[ 0 ][j] /= n[ 0 ][j]; else means[0][j] = -99.;
˜ ^
fitmodel.cpp:514:66: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[0][j] > 0) means[ 0 ][j] /= n[ 0 ][j]; else means[0][j] = -99.;
˜˜˜˜˜ ^
fitmodel.cpp:518:61: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (int i = 0; i != length; i++) mean[i] = means[ 0 ][ cn[i] ];
˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:524:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
n[ cohort[i] - 1][ cn[i] ] += posterior[i]*u[i];
˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:524:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
n[ cohort[i] - 1][ cn[i] ] += posterior[i]*u[i];
˜ ^˜˜˜˜
fitmodel.cpp:525:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
means[ cohort[i] - 1][ cn[i] ] += posterior[i]*u[i]*signal[i];
˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:525:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
means[ cohort[i] - 1][ cn[i] ] += posterior[i]*u[i]*signal[i];
˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:530:8: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[i][j] > 0) means[i][j] /= n[i][j]; else means[i][j] = -99.;
˜ ^
fitmodel.cpp:530:11: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[i][j] > 0) means[i][j] /= n[i][j]; else means[i][j] = -99.;
˜ ^
fitmodel.cpp:530:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[i][j] > 0) means[i][j] /= n[i][j]; else means[i][j] = -99.;
˜˜˜˜˜ ^
fitmodel.cpp:530:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[i][j] > 0) means[i][j] /= n[i][j]; else means[i][j] = -99.;
˜˜˜˜˜ ^
fitmodel.cpp:530:36: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[i][j] > 0) means[i][j] /= n[i][j]; else means[i][j] = -99.;
˜ ^
fitmodel.cpp:530:39: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[i][j] > 0) means[i][j] /= n[i][j]; else means[i][j] = -99.;
˜ ^
fitmodel.cpp:530:54: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[i][j] > 0) means[i][j] /= n[i][j]; else means[i][j] = -99.;
˜˜˜˜˜ ^
fitmodel.cpp:530:57: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[i][j] > 0) means[i][j] /= n[i][j]; else means[i][j] = -99.;
˜˜˜˜˜ ^
fitmodel.cpp:535:66: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (int i = 0; i != length; i++) mean[i] = means[ cohort[i] - 1][ cn[i] ];
˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:535:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (int i = 0; i != length; i++) mean[i] = means[ cohort[i] - 1][ cn[i] ];
˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:550:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
vector<vector<double> > n(ncohorts, vector<double>(ncomp, 0 ));
˜ ^˜˜˜˜˜˜˜
fitmodel.cpp:554:54: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (int i = 0; i != length; i++) means[ cohort[i] - 1][ cn[i] ] = mean[i];
˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:554:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (int i = 0; i != length; i++) means[ cohort[i] - 1][ cn[i] ] = mean[i];
˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:559:17: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variances[i][j] = 0;
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:559:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variances[i][j] = 0;
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:566:49: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double res = signal[i] - means[ cohort[i] - 1 ][ cn[i] ];
˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:566:56: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double res = signal[i] - means[ cohort[i] - 1 ][ cn[i] ];
˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:576:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
n[ cohort[i] - 1][ 0 ] += posterior[i];
˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:577:49: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double res = signal[i] - means[ cohort[i] - 1 ][ cn[i] ];
˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:577:56: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double res = signal[i] - means[ cohort[i] - 1 ][ cn[i] ];
˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:578:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variances[ cohort[i] - 1 ][ 0 ] += posterior[i]*u[i]*res*res;
˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:582:13: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[i][0] >= 2) variances[ i ][ 0 ] /= n[ i ][ 0 ]; else variances[ i ][ 0 ] = 0.0001;
˜ ^
fitmodel.cpp:582:36: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[i][0] >= 2) variances[ i ][ 0 ] /= n[ i ][ 0 ]; else variances[ i ][ 0 ] = 0.0001;
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:582:51: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[i][0] >= 2) variances[ i ][ 0 ] /= n[ i ][ 0 ]; else variances[ i ][ 0 ] = 0.0001;
˜ ^
fitmodel.cpp:582:77: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[i][0] >= 2) variances[ i ][ 0 ] /= n[ i ][ 0 ]; else variances[ i ][ 0 ] = 0.0001;
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:584:74: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (int i = 0; i != length; i++) variance[i] = variances[ cohort[i] - 1][ 0 ];
˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:589:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
n[ 0 ][ cn[i] ] += posterior[i];
˜ ^˜˜˜˜
fitmodel.cpp:590:49: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double res = signal[i] - means[ cohort[i] - 1 ][ cn[i] ];
˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:590:56: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double res = signal[i] - means[ cohort[i] - 1 ][ cn[i] ];
˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:591:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variances[ 0 ][ cn[i] ] += posterior[i]*u[i]*res*res;
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:594:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[0][j] >= 2) variances[ 0 ][j] /= n[ 0 ][j]; else variances[ 0 ][j] = 0.0001;
˜ ^
fitmodel.cpp:594:40: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[0][j] >= 2) variances[ 0 ][j] /= n[ 0 ][j]; else variances[ 0 ][j] = 0.0001;
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:594:53: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[0][j] >= 2) variances[ 0 ][j] /= n[ 0 ][j]; else variances[ 0 ][j] = 0.0001;
˜ ^
fitmodel.cpp:594:77: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[0][j] >= 2) variances[ 0 ][j] /= n[ 0 ][j]; else variances[ 0 ][j] = 0.0001;
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:596:69: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (int i = 0; i != length; i++) variance[i] = variances[ 0 ][ cn[i] ];
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:601:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
n[ cohort[i] - 1][ cn[i] ] += posterior[i];
˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:601:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
n[ cohort[i] - 1][ cn[i] ] += posterior[i];
˜ ^˜˜˜˜
fitmodel.cpp:602:49: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double res = signal[i] - means[ cohort[i] - 1 ][ cn[i] ];
˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:602:56: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double res = signal[i] - means[ cohort[i] - 1 ][ cn[i] ];
˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:603:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variances[ cohort[i] - 1][ cn[i] ] += posterior[i]*u[i]*res*res;
˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:603:34: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variances[ cohort[i] - 1][ cn[i] ] += posterior[i]*u[i]*res*res;
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:608:8: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[i][j] >= 2) variances[i][j] /= n[i][j]; else variances[i][j] = 0.0001; //this may be an issue: not enough points in a specific cohort to estimate the variance of this component
˜ ^
fitmodel.cpp:608:11: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[i][j] >= 2) variances[i][j] /= n[i][j]; else variances[i][j] = 0.0001; //this may be an issue: not enough points in a specific cohort to estimate the variance of this component
˜ ^
fitmodel.cpp:608:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[i][j] >= 2) variances[i][j] /= n[i][j]; else variances[i][j] = 0.0001; //this may be an issue: not enough points in a specific cohort to estimate the variance of this component
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:608:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[i][j] >= 2) variances[i][j] /= n[i][j]; else variances[i][j] = 0.0001; //this may be an issue: not enough points in a specific cohort to estimate the variance of this component
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:608:41: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[i][j] >= 2) variances[i][j] /= n[i][j]; else variances[i][j] = 0.0001; //this may be an issue: not enough points in a specific cohort to estimate the variance of this component
˜ ^
fitmodel.cpp:608:44: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[i][j] >= 2) variances[i][j] /= n[i][j]; else variances[i][j] = 0.0001; //this may be an issue: not enough points in a specific cohort to estimate the variance of this component
˜ ^
fitmodel.cpp:608:63: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[i][j] >= 2) variances[i][j] /= n[i][j]; else variances[i][j] = 0.0001; //this may be an issue: not enough points in a specific cohort to estimate the variance of this component
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:608:66: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[i][j] >= 2) variances[i][j] /= n[i][j]; else variances[i][j] = 0.0001; //this may be an issue: not enough points in a specific cohort to estimate the variance of this component
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:611:74: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (int i = 0; i != length; i++) variance[i] = variances[ cohort[i] - 1][ cn[i] ];
˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:611:80: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (int i = 0; i != length; i++) variance[i] = variances[ cohort[i] - 1][ cn[i] ];
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:628:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
vector<vector<double> > n(ncohorts, vector<double>(ncomp, 0 )); //sum(z[,i])
˜ ^˜˜˜˜˜˜˜
fitmodel.cpp:629:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
vector<vector<double> > val(ncohorts, vector<double>(ncomp, 0 )); //sum( z[,i]*(log(u[,i]) - u[,i]) )
˜˜˜ ^˜˜˜˜˜˜˜
fitmodel.cpp:667:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
n[ cohort[i] - 1][ 0 ] += posterior[i];
˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:668:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
val[ cohort[i] - 1 ][ 0 ] += posterior[i]*( log(u[i]) - u[i] );
˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:672:11: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
val[i][ 0 ] = val[ i ][ 0 ]/n[ i ][ 0 ];
˜˜˜ ^
fitmodel.cpp:672:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
val[i][ 0 ] = val[ i ][ 0 ]/n[ i ][ 0 ];
˜˜˜ ^
fitmodel.cpp:672:38: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
val[i][ 0 ] = val[ i ][ 0 ]/n[ i ][ 0 ];
˜ ^
fitmodel.cpp:676:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if( nus[ i ][ 0 ] >= numax ) continue;
˜˜˜ ^
fitmodel.cpp:678:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double xx = (nus[ i ][ 0 ] + 1)/2;
˜˜˜ ^
fitmodel.cpp:679:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
tvalue = 1 + val[ i ][ 0 ] + gmath::psi(xx) - log( xx );
˜˜˜ ^
fitmodel.cpp:685:7: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
nus[ i ][ 0 ] = zeroin(rmin, rmax, function_to_find_root, 0.05);
˜˜˜ ^
fitmodel.cpp:692:62: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (int i = 0; i != length; i++) nu[i] = nus[ cohort[i] - 1][ 0 ];
˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:697:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
n[ 0 ][ cn[i] ] += posterior[i];
˜ ^˜˜˜˜
fitmodel.cpp:698:17: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
val[ 0 ][ cn[i] ] += posterior[i]*( log(u[i]) - u[i] );
˜˜˜ ^˜˜˜˜
fitmodel.cpp:702:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
val[ 0 ][j] = val[ 0 ][j]/n[ 0 ][j];
˜˜˜ ^
fitmodel.cpp:702:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
val[ 0 ][j] = val[ 0 ][j]/n[ 0 ][j];
˜˜˜ ^
fitmodel.cpp:702:40: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
val[ 0 ][j] = val[ 0 ][j]/n[ 0 ][j];
˜ ^
fitmodel.cpp:706:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if( nus[ 0 ][ j ] >= numax ) continue;
˜˜˜ ^
fitmodel.cpp:708:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double xx = (nus[ 0 ][ j ] + 1)/2;
˜˜˜ ^
fitmodel.cpp:709:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
tvalue = 1 + val[ 0 ][ j ] + gmath::psi(xx) - log( xx );
˜˜˜ ^
fitmodel.cpp:715:12: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
nus[ 0 ][ j ] = zeroin(rmin, rmax, function_to_find_root, 0.05);
˜˜˜ ^
fitmodel.cpp:722:57: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (int i = 0; i != length; i++) nu[i] = nus[ 0 ][ cn[i] ];
˜˜˜ ^˜˜˜˜
fitmodel.cpp:727:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
n[ cohort[i] - 1][ cn[i] ] += posterior[i];
˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:727:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
n[ cohort[i] - 1][ cn[i] ] += posterior[i];
˜ ^˜˜˜˜
fitmodel.cpp:728:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
val[ cohort[i] - 1 ][ cn[i] ] += posterior[i]*( log(u[i]) - u[i] );
˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:728:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
val[ cohort[i] - 1 ][ cn[i] ] += posterior[i]*( log(u[i]) - u[i] );
˜˜˜ ^˜˜˜˜
fitmodel.cpp:733:8: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[i][j] > 0) val[i][j] /= n[i][j];
˜ ^
fitmodel.cpp:733:11: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[i][j] > 0) val[i][j] /= n[i][j];
˜ ^
fitmodel.cpp:733:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[i][j] > 0) val[i][j] /= n[i][j];
˜˜˜ ^
fitmodel.cpp:733:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[i][j] > 0) val[i][j] /= n[i][j];
˜˜˜ ^
fitmodel.cpp:733:34: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[i][j] > 0) val[i][j] /= n[i][j];
˜ ^
fitmodel.cpp:733:37: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[i][j] > 0) val[i][j] /= n[i][j];
˜ ^
fitmodel.cpp:739:9: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[ i ][ j ] > 0) {
˜ ^
fitmodel.cpp:739:14: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (n[ i ][ j ] > 0) {
˜ ^
fitmodel.cpp:740:13: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if( nus[ i ][ j ] >= numax ) continue;
˜˜˜ ^
fitmodel.cpp:740:18: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if( nus[ i ][ j ] >= numax ) continue;
˜˜˜ ^
fitmodel.cpp:743:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double xx = (nus[ i ][ j ] + 1)/2;
˜˜˜ ^
fitmodel.cpp:743:27: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double xx = (nus[ i ][ j ] + 1)/2;
˜˜˜ ^
fitmodel.cpp:744:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
tvalue = 1 + val[ i ][ j ] + gmath::psi(xx) - log( xx );
˜˜˜ ^
fitmodel.cpp:744:27: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
tvalue = 1 + val[ i ][ j ] + gmath::psi(xx) - log( xx );
˜˜˜ ^
fitmodel.cpp:750:11: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
nus[ i ][ j ] = zeroin(rmin, rmax, function_to_find_root, 0.05);
˜˜˜ ^
fitmodel.cpp:750:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
nus[ i ][ j ] = zeroin(rmin, rmax, function_to_find_root, 0.05);
˜˜˜ ^
fitmodel.cpp:755:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
} else { nus[ i ][ j ] = 10;} //some default values when proba of class is 0
˜˜˜ ^
fitmodel.cpp:755:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
} else { nus[ i ][ j ] = 10;} //some default values when proba of class is 0
˜˜˜ ^
fitmodel.cpp:758:62: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (int i = 0; i != length; i++) nu[i] = nus[ cohort[i] - 1][ cn[i] ];
˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:758:68: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (int i = 0; i != length; i++) nu[i] = nus[ cohort[i] - 1][ cn[i] ];
˜˜˜ ^˜˜˜˜
fitmodel.cpp:787:27: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
cout << "\t" << nus[i][j];
˜˜˜ ^
fitmodel.cpp:787:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
cout << "\t" << nus[i][j];
˜˜˜ ^
fitmodel.cpp:801:11: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
nus[i][j] = -99.0;
˜˜˜ ^
fitmodel.cpp:801:14: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
nus[i][j] = -99.0;
˜˜˜ ^
fitmodel.cpp:802:17: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variances[i][j] = -99.;
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:802:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variances[i][j] = -99.;
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:803:13: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
means[i][j] = -99.;
˜˜˜˜˜ ^
fitmodel.cpp:803:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
means[i][j] = -99.;
˜˜˜˜˜ ^
fitmodel.cpp:804:17: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
postLogit[j] = 0.;
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:805:17: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
postTable[i][j] = -1.;
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:805:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
postTable[i][j] = -1.;
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:812:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
postLogit2[ s ][ j ] = -0.1;
˜˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:812:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
postLogit2[ s ][ j ] = -0.1;
˜˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:813:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
proba_d[ s ][ j ] = 0.;
˜˜˜˜˜˜˜ ^
fitmodel.cpp:813:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
proba_d[ s ][ j ] = 0.;
˜˜˜˜˜˜˜ ^
fitmodel.cpp:821:45: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (posterior[i] > postTable [cohort[i] - 1 ][ cn[i] ] ) {
˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:821:52: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (posterior[i] > postTable [cohort[i] - 1 ][ cn[i] ] ) {
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:822:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variances[ cohort[i] - 1 ][ cn[i] ] = variance[i];
˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:822:35: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variances[ cohort[i] - 1 ][ cn[i] ] = variance[i];
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:823:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
means[ cohort[i] - 1 ][ cn[i] ] = mean[i];
˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:823:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
means[ cohort[i] - 1 ][ cn[i] ] = mean[i];
˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:824:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
postTable [cohort[i] - 1 ][ cn[i] ] = posterior[i];
˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:824:35: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
postTable [cohort[i] - 1 ][ cn[i] ] = posterior[i];
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:825:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
nus[ cohort[i] - 1 ][ cn[i] ] = nu[i];
˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:825:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
nus[ cohort[i] - 1 ][ cn[i] ] = nu[i];
˜˜˜ ^˜˜˜˜
fitmodel.cpp:829:36: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (posterior[i] > postLogit2[ s ][ cn[i] ]) {
˜˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:829:41: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (posterior[i] > postLogit2[ s ][ cn[i] ]) {
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:830:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
proba_d[ s ][ cn[i] ] = proba_disease[i];
˜˜˜˜˜˜˜ ^
fitmodel.cpp:830:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
proba_d[ s ][ cn[i] ] = proba_disease[i];
˜˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:831:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
postLogit2[ s ][ cn[i] ] = posterior[i];
˜˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:831:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
postLogit2[ s ][ cn[i] ] = posterior[i];
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:834:35: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (posterior[i] > postLogit[ cn[i] ]) {
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:835:18: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
postLogit[ cn[i] ] = posterior[i];
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:836:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
alpha_m[ cn[i] ] = alpha[i];
˜˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:843:39: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
myRank * hope = new myRank(means[ i ]);
˜˜˜˜˜ ^
fitmodel.cpp:852:42: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variance[j] = variances[ cohort[j] - 1 ][ ranks[cohort[j] - 1][ cn[j] ] ];
˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:852:49: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variance[j] = variances[ cohort[j] - 1 ][ ranks[cohort[j] - 1][ cn[j] ] ];
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fitmodel.cpp:852:65: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variance[j] = variances[ cohort[j] - 1 ][ ranks[cohort[j] - 1][ cn[j] ] ];
˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:852:71: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variance[j] = variances[ cohort[j] - 1 ][ ranks[cohort[j] - 1][ cn[j] ] ];
˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:853:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
nu[j] = nus[ cohort[j] - 1 ][ ranks[cohort[j] - 1][ cn[j] ] ];
˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:853:37: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
nu[j] = nus[ cohort[j] - 1 ][ ranks[cohort[j] - 1][ cn[j] ] ];
˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fitmodel.cpp:853:53: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
nu[j] = nus[ cohort[j] - 1 ][ ranks[cohort[j] - 1][ cn[j] ] ];
˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:853:59: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
nu[j] = nus[ cohort[j] - 1 ][ ranks[cohort[j] - 1][ cn[j] ] ];
˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:854:34: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
mean[j] = means[ cohort[j] - 1 ][ ranks[cohort[j]-1][cn[j]] ];
˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:854:44: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
mean[j] = means[ cohort[j] - 1 ][ ranks[cohort[j]-1][cn[j]] ];
˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fitmodel.cpp:854:59: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
mean[j] = means[ cohort[j] - 1 ][ ranks[cohort[j]-1][cn[j]] ];
˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜
fitmodel.cpp:854:63: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
mean[j] = means[ cohort[j] - 1 ][ ranks[cohort[j]-1][cn[j]] ];
˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:855:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
alpha[j] = alpha_m [ ranks[cohort[j]-1][cn[j]] ];
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fitmodel.cpp:855:44: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
alpha[j] = alpha_m [ ranks[cohort[j]-1][cn[j]] ];
˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜
fitmodel.cpp:855:48: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
alpha[j] = alpha_m [ ranks[cohort[j]-1][cn[j]] ];
˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:857:51: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
proba_disease[j] = proba_d[ assoc_strata[j] - 1 ][ ranks[cohort[j]-1][cn[j]] ];
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:857:61: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
proba_disease[j] = proba_d[ assoc_strata[j] - 1 ][ ranks[cohort[j]-1][cn[j]] ];
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fitmodel.cpp:857:76: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
proba_disease[j] = proba_d[ assoc_strata[j] - 1 ][ ranks[cohort[j]-1][cn[j]] ];
˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜
fitmodel.cpp:857:80: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
proba_disease[j] = proba_d[ assoc_strata[j] - 1 ][ ranks[cohort[j]-1][cn[j]] ];
˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:867:17: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variances[i][j] = 0.0001;
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:867:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variances[i][j] = 0.0001;
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:868:11: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
nus[i][j] = -99.;
˜˜˜ ^
fitmodel.cpp:868:14: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
nus[i][j] = -99.;
˜˜˜ ^
fitmodel.cpp:869:13: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
means[i][j] = -99.;
˜˜˜˜˜ ^
fitmodel.cpp:869:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
means[i][j] = -99.;
˜˜˜˜˜ ^
fitmodel.cpp:870:17: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
postLogit[j] = 0.;
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:871:17: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
postTable[i][j] = 0;
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:871:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
postTable[i][j] = 0;
˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:877:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
postLogit2[ i ][ j ] = -0.1;
˜˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:877:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
postLogit2[ i ][ j ] = -0.1;
˜˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:883:45: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (posterior[i] > postTable [cohort[i] - 1 ][ cn[i] ] ) {
˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:883:52: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (posterior[i] > postTable [cohort[i] - 1 ][ cn[i] ] ) {
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:884:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
nus[ cohort[i] - 1 ][ cn[i] ] = nu[i];
˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:884:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
nus[ cohort[i] - 1 ][ cn[i] ] = nu[i];
˜˜˜ ^˜˜˜˜
fitmodel.cpp:885:49: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (variance[i] > 0) variances[ cohort[i] - 1 ][ cn[i] ] = variance[i];
˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:885:56: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (variance[i] > 0) variances[ cohort[i] - 1 ][ cn[i] ] = variance[i];
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:886:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
means[ cohort[i] - 1 ][ cn[i] ] = mean[i];
˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:886:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
means[ cohort[i] - 1 ][ cn[i] ] = mean[i];
˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:887:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
postTable [cohort[i] - 1 ][ cn[i] ] = posterior[i];
˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:887:35: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
postTable [cohort[i] - 1 ][ cn[i] ] = posterior[i];
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:890:35: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (posterior[i] > postLogit[ cn[i] ]) {
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:891:18: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
postLogit[ cn[i] ] = posterior[i];
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:895:36: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (posterior[i] > postLogit2[ s ][ cn[i] ]) {
˜˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:895:41: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (posterior[i] > postLogit2[ s ][ cn[i] ]) {
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:897:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
proba_d[ s ] [ cn[i] ] = proba_disease[i];
˜˜˜˜˜˜˜ ^
fitmodel.cpp:897:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
proba_d[ s ] [ cn[i] ] = proba_disease[i];
˜˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:898:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
postLogit2[ s ][ cn[i] ] = posterior[i];
˜˜˜˜˜˜˜˜˜˜ ^
fitmodel.cpp:898:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
postLogit2[ s ][ cn[i] ] = posterior[i];
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:906:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
nu[i] = nus[ cohort[i] - 1 ][ cn[i] ];
˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:906:35: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
nu[i] = nus[ cohort[i] - 1 ][ cn[i] ];
˜˜˜ ^˜˜˜˜
fitmodel.cpp:907:40: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variance[i] = variances[ cohort[i] - 1 ][ cn[i] ];
˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:907:47: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
variance[i] = variances[ cohort[i] - 1 ][ cn[i] ];
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:908:32: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
mean[i] = means[ cohort[i] - 1 ][ cn[i] ];
˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:908:39: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
mean[i] = means[ cohort[i] - 1 ][ cn[i] ];
˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:909:49: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
proba_disease[i] = proba_d[ assoc_strata[i] - 1 ][ cn[i] ];
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
fitmodel.cpp:909:56: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
proba_disease[i] = proba_d[ assoc_strata[i] - 1 ][ cn[i] ];
˜˜˜˜˜˜˜ ^˜˜˜˜
fitmodel.cpp:968:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
vector<double> def(ncomp, 0.0);
˜˜˜ ^˜˜˜˜
295 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c glm_test.cpp -o glm_test.o
In file included from glm_test.cpp:2:
./fitmodel.h:161:18: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return(index[i1] < index[i2]);
˜˜˜˜˜ ^˜
./fitmodel.h:161:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return(index[i1] < index[i2]);
˜˜˜˜˜ ^˜
./fitmodel.h:166:53: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (int i = 0; i != (int) index.size(); i++) w[i] = i;
˜ ^
glm_test.cpp:84:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
if (!(pi)) {wi = ri = 0.0;}
˜ ^˜
glm_test.cpp:151:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
if (!(pi && (weights[i]>0.0))) {wi = ri = 0.0;} else {
^˜ ˜˜
5 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c mla.cpp -o mla.o
mla.cpp:60:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
if (swt[s])
˜˜ ^˜˜˜˜˜
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c routine.cpp -o routine.o
In file included from routine.cpp:2:
./fitmodel.h:161:18: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return(index[i1] < index[i2]);
˜˜˜˜˜ ^˜
./fitmodel.h:161:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return(index[i1] < index[i2]);
˜˜˜˜˜ ^˜
./fitmodel.h:166:53: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (int i = 0; i != (int) index.size(); i++) w[i] = i;
˜ ^
routine.cpp:110:22: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
array_strat_var[ strat_var[i] ]++;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜
routine.cpp:111:27: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ( array_strat_var[ strat_var[i] ] == 1 ) nstrat_var++;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜
routine.cpp:118:23: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
array_strat_mean[ strat_mean[i] ]++;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
routine.cpp:119:28: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ( array_strat_mean[ strat_mean[i] ] == 1 ) nstrat_mean++;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
routine.cpp:126:24: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
array_strat_assoc[ strat_assoc[i] ]++;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
routine.cpp:127:29: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ( array_strat_assoc[ strat_assoc[i] ] == 1 ) nstrat_assoc++;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
9 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c zeroin.c -o zeroin.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o CNVtools.so fitmodel.o glm_test.o mla.o routine.o zeroin.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/CNVtools.Rcheck/CNVtools/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CNVtools)