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Package 73/671HostnameOS / ArchBUILDCHECKBUILD BIN
BiocInstaller 1.10.1
Bioconductor Package Maintainer
Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/BiocInstaller
Last Changed Rev: 76085 / Revision: 76155
Last Changed Date: 2013-04-26 14:35:53 -0700 (Fri, 26 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ OK ] OK 

Summary

Package: BiocInstaller
Version: 1.10.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch BiocInstaller_1.10.1.tar.gz
StartedAt: 2013-05-01 02:51:47 -0700 (Wed, 01 May 2013)
EndedAt: 2013-05-01 02:52:27 -0700 (Wed, 01 May 2013)
EllapsedTime: 39.8 seconds
RetCode: 0
Status:  OK 
CheckDir: BiocInstaller.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/BiocInstaller.Rcheck'
* using R version 3.0.0 Patched (2013-04-08 r62531)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'BiocInstaller/DESCRIPTION' ... OK
* this is package 'BiocInstaller' version '1.10.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'BiocInstaller' can be installed ... [1s/1s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [6s/18s] OK
Examples with CPU or elapsed time > 5s
           user system elapsed
biocValid 4.289  0.358   16.74
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'BiocInstaller_unit_tests.R' [2s/2s]
 [2s/2s] OK
* checking PDF version of manual ... OK

BiocInstaller.Rcheck/00install.out:

* installing *source* package 'BiocInstaller' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Bioconductor version 2.12 (BiocInstaller 1.10.1), ?biocLite for help
* DONE (BiocInstaller)

BiocInstaller.Rcheck/BiocInstaller-Ex.timings:

nameusersystemelapsed
BiocUpgrade0.0070.0020.009
biocLite0.0480.0050.053
biocValid 4.289 0.35816.740
biocVersion0.0130.0000.013
biocinstallRepos0.0190.0010.021
packageGroups0.1470.0050.162
useDevel0.0140.0000.015