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Package 627/671HostnameOS / ArchBUILDCHECKBUILD BIN
stepwiseCM 1.6.0
Askar Obulkasim
Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/stepwiseCM
Last Changed Rev: 75263 / Revision: 76155
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ OK ] OK 

Summary

Package: stepwiseCM
Version: 1.6.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch stepwiseCM_1.6.0.tar.gz
StartedAt: 2013-05-01 11:21:50 -0700 (Wed, 01 May 2013)
EndedAt: 2013-05-01 11:28:04 -0700 (Wed, 01 May 2013)
EllapsedTime: 373.3 seconds
RetCode: 0
Status:  OK 
CheckDir: stepwiseCM.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/stepwiseCM.Rcheck'
* using R version 3.0.0 Patched (2013-04-08 r62531)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'stepwiseCM/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'stepwiseCM' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'stepwiseCM' can be installed ... [9s/10s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Non-standard license specification:
  GPL (http://www.gnu.org/copyleft/gpl.html)
Standardizable: TRUE
Standardized license specification:
  GPL
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Classifier.par: no visible binding for global variable 'stepwiseCM'
Proximity: no visible binding for global variable 'Stepwise'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [278s/284s] OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
Step.pred          52.914  1.280  55.155
Curve.generator    51.220  0.972  53.447
RS.generator       50.694  1.163  52.640
stepwiseCM-package 49.216  1.038  51.168
Proximity          31.653  0.166  32.527
Classifier         30.659  1.056  32.720
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/stepwiseCM.Rcheck/00check.log'
for details.

stepwiseCM.Rcheck/00install.out:

* installing *source* package 'stepwiseCM' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (stepwiseCM)

stepwiseCM.Rcheck/stepwiseCM-Ex.timings:

nameusersystemelapsed
CNS0.3960.0250.424
Classifier30.659 1.05632.720
Classifier.par0.2370.0310.278
Curve.generator51.220 0.97253.447
Proximity31.653 0.16632.527
RS.generator50.694 1.16352.640
Step.pred52.914 1.28055.155
stepwiseCM-package49.216 1.03851.168