>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=rsbml.buildbin-libdir rsbml_2.18.0.tar.gz'
>>>>>>>
* installing *source* package 'rsbml' ...
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for LIBSBML3... yes
configure: === Begin local SOSLib build ===
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... config/install-sh -c -d
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking build system type... i386-apple-darwin10.8.0
checking host system type... i386-apple-darwin10.8.0
checking for g++... g++
checking for C++ compiler default output file name... a.out
checking whether the C++ compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of g++... gcc3
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking whether gcc accepts -fpic... yes
checking how to run the C preprocessor... gcc -E
checking for ranlib... ranlib
checking for a BSD-compatible install... /usr/bin/install -c
checking whether make sets $(MAKE)... (cached) yes
checking for autoconf... /usr/bin/autoconf
checking for aclocal... /usr/bin/aclocal
checking for make... /usr/bin/make
checking for ar... /usr/bin/ar
checking for swig... /usr/bin/swig
checking for perl... /usr/bin/perl
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for SBML... yes
checking for correct functioning of SBML... yes
checking for SUNDIALS Library headers... checking for SUNDIALS Library... checking correct functioning of SUNDIALS... no:
CFLAGS=-g -O2 -pg -Wno-unknown-pragmas -Wall -ansi -std=iso9899:1990
LDFLAGS=
LIBS= -lm -lstdc++
configure: error: Can not link to SUNDIALS Library
configure: === End local SOSLib build ===
configure: creating ./config.status
config.status: creating src/Makevars
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include/libxml2 -I/usr/local/include -DLIBSBML3 -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c StringMap.c -o StringMap.o
StringMap.c:393:66: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
StringMapItem_t *item = (StringMapItem_t *) List_get(list, itemIndex);
˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
StringMap.c:396:25: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
List_remove(list, itemIndex);
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
2 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include/libxml2 -I/usr/local/include -DLIBSBML3 -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c check.c -o check.o
check.c:19:46: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
SET_VECTOR_ELT(r_problem, 0, ScalarInteger(XMLError_getLine(error)));
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
check.c:20:46: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
SET_VECTOR_ELT(r_problem, 1, ScalarInteger(XMLError_getColumn(error)));
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
check.c:48:66: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
XMLError_t *error = (XMLError_t *)SBMLDocument_getError(doc, i);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
check.c:84:66: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
XMLError_t *error = (XMLError_t *)SBMLDocument_getError(doc, i);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
check.c:127:66: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
XMLError_t *error = (XMLError_t *)SBMLDocument_getError(doc, i);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
5 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include/libxml2 -I/usr/local/include -DLIBSBML3 -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c doc.c -o doc.o
doc.c:214:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(CVTerm, cvterm, ModelQualifierType, modelQualifierType,
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:216:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(CVTerm, cvterm, BiologicalQualifierType, biologicalQualifierType,
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:229:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(SBase, s_base, MetaId, metaId, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:231:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(SBase, s_base, AnnotationString, annotation, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:232:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(SBase, s_base, NotesString, notes, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:233:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(SBase, s_base, SBOTerm, sboTerm, INTEGER_SCALAR);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:234:3: warning: use of GNU statement expression extension [-Wgnu]
ADD_LIST(SBase, s_base, CVTerm, cvTerms, CVTerm, cvterm);
^
doc.c:195:18: note: expanded from macro 'ADD_LIST'
#define ADD_LIST ADD_LIST_NOCHECK
^
doc.c:127:4: note: expanded from macro 'ADD_LIST_NOCHECK'
({ \
^
doc.c:255:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(SpeciesType, species_type, Id, id, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:256:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(SpeciesType, species_type, Name, name, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:275:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Species, species, Id, id, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:276:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Species, species, Name, name, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:277:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Species, species, Compartment, compartment, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:278:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Species, species, InitialConcentration, initialConcentration, REAL_SCALAR);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:279:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Species, species, InitialAmount, initialAmount, REAL_SCALAR);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:280:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Species, species, SubstanceUnits, substanceUnits, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:281:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Species, species, SpatialSizeUnits, spatialSizeUnits, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:282:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Species, species, Units, units, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:283:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Species, species, HasOnlySubstanceUnits, hasOnlySubstanceUnits, LOGICAL_SCALAR);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:284:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Species, species, BoundaryCondition, boundaryCondition, LOGICAL_SCALAR);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:285:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Species, species, Charge, charge, INTEGER_SCALAR);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:286:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Species, species, Constant, constant, LOGICAL_SCALAR);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:304:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(FunctionDefinition, function_definition, Id, id, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:305:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(FunctionDefinition, function_definition, Name, name, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:306:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR_OBJ(FunctionDefinition, function_definition, Math, math, ASTNode, ast_node);
^
doc.c:193:26: note: expanded from macro 'SET_XML_ATTR_OBJ'
#define SET_XML_ATTR_OBJ SET_XML_ATTR_OBJ_NOCHECK
^
doc.c:139:4: note: expanded from macro 'SET_XML_ATTR_OBJ_NOCHECK'
({ \
^
doc.c:324:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Unit, unit, Kind, kind, rsbml_build_doc_unit_kind);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:325:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Unit, unit, Exponent, exponent, INTEGER_SCALAR);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:326:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Unit, unit, Scale, unitScale, INTEGER_SCALAR);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:327:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Unit, unit, Multiplier, multiplier, REAL_SCALAR);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:328:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Unit, unit, Offset, offset, REAL_SCALAR);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:346:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(UnitDefinition, unit_definition, Id, id, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:347:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(UnitDefinition, unit_definition, Name, name, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:348:3: warning: use of GNU statement expression extension [-Wgnu]
ADD_LIST(UnitDefinition, unit_definition, Unit, units, Unit, unit);
^
doc.c:195:18: note: expanded from macro 'ADD_LIST'
#define ADD_LIST ADD_LIST_NOCHECK
^
doc.c:127:4: note: expanded from macro 'ADD_LIST_NOCHECK'
({ \
^
doc.c:367:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(CompartmentType, compartment_type, Id, id, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:368:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(CompartmentType, compartment_type, Name, name, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:387:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Compartment, compartment, Id, id, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:388:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Compartment, compartment, Name, name, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:389:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Compartment, compartment, SpatialDimensions, spatialDimensions, INTEGER_SCALAR);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:389:80: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
SET_XML_ATTR(Compartment, compartment, SpatialDimensions, spatialDimensions, INTEGER_SCALAR);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
doc.c:154:29: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
converter(r_ ## name)); \
^
doc.c:4:27: note: expanded from macro 'INTEGER_SCALAR'
#define INTEGER_SCALAR(x) INTEGER(x)[0]
^˜˜˜˜˜˜˜˜˜˜˜˜
doc.c:390:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Compartment, compartment, Size, size, REAL_SCALAR);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:391:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Compartment, compartment, Units, units, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:392:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Compartment, compartment, Outside, outside, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:393:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Compartment, compartment, Constant, constant, LOGICAL_SCALAR);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:411:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Parameter, parameter, Id, id, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:412:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Parameter, parameter, Name, name, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:413:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Parameter, parameter, Value, value, REAL_SCALAR);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:414:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Parameter, parameter, Units, units, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:415:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Parameter, parameter, Constant, constant, LOGICAL_SCALAR);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:433:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR_OBJ(KineticLaw, kinetic_law, Math, math, ASTNode, ast_node);
^
doc.c:193:26: note: expanded from macro 'SET_XML_ATTR_OBJ'
#define SET_XML_ATTR_OBJ SET_XML_ATTR_OBJ_NOCHECK
^
doc.c:139:4: note: expanded from macro 'SET_XML_ATTR_OBJ_NOCHECK'
({ \
^
doc.c:434:3: warning: use of GNU statement expression extension [-Wgnu]
ADD_LIST(KineticLaw, kinetic_law, Parameter, parameters, Parameter, parameter);
^
doc.c:195:18: note: expanded from macro 'ADD_LIST'
#define ADD_LIST ADD_LIST_NOCHECK
^
doc.c:127:4: note: expanded from macro 'ADD_LIST_NOCHECK'
({ \
^
doc.c:435:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(KineticLaw, kinetic_law, TimeUnits, timeUnits, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:436:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(KineticLaw, kinetic_law, SubstanceUnits, substanceUnits, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:452:5: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(SpeciesReference, simple_species_reference, Id, id, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:454:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(SpeciesReference, simple_species_reference, Species, species, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:453:8: warning: unused variable 'tmp' [-Wunused-variable]
SEXP tmp = GET_SLOT(r_simple_species_reference, install("species"));
^
doc.c:478:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR_OBJ(StoichiometryMath, stoichiometry_math, Math, math, ASTNode, ast_node);
^
doc.c:193:26: note: expanded from macro 'SET_XML_ATTR_OBJ'
#define SET_XML_ATTR_OBJ SET_XML_ATTR_OBJ_NOCHECK
^
doc.c:139:4: note: expanded from macro 'SET_XML_ATTR_OBJ_NOCHECK'
({ \
^
doc.c:503:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(SpeciesReference, species_reference, Stoichiometry, stoichiometry, REAL_SCALAR);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:507:5: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR_OBJ(SpeciesReference, species_reference, StoichiometryMath, stoichiometryMath,
^
doc.c:193:26: note: expanded from macro 'SET_XML_ATTR_OBJ'
#define SET_XML_ATTR_OBJ SET_XML_ATTR_OBJ_NOCHECK
^
doc.c:139:4: note: expanded from macro 'SET_XML_ATTR_OBJ_NOCHECK'
({ \
^
doc.c:569:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Reaction, reaction, Id, id, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:570:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Reaction, reaction, Name, name, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:571:3: warning: use of GNU statement expression extension [-Wgnu]
ADD_LIST(Reaction, reaction, Reactant, reactants, SpeciesReference, species_reference);
^
doc.c:195:18: note: expanded from macro 'ADD_LIST'
#define ADD_LIST ADD_LIST_NOCHECK
^
doc.c:127:4: note: expanded from macro 'ADD_LIST_NOCHECK'
({ \
^
doc.c:572:3: warning: use of GNU statement expression extension [-Wgnu]
ADD_LIST(Reaction, reaction, Product, products, SpeciesReference, species_reference);
^
doc.c:195:18: note: expanded from macro 'ADD_LIST'
#define ADD_LIST ADD_LIST_NOCHECK
^
doc.c:127:4: note: expanded from macro 'ADD_LIST_NOCHECK'
({ \
^
doc.c:574:3: warning: use of GNU statement expression extension [-Wgnu]
ADD_LIST(Reaction, reaction, Modifier, modifiers, SpeciesReference, modifier_species_reference);
^
doc.c:195:18: note: expanded from macro 'ADD_LIST'
#define ADD_LIST ADD_LIST_NOCHECK
^
doc.c:127:4: note: expanded from macro 'ADD_LIST_NOCHECK'
({ \
^
doc.c:578:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR_OBJ(Reaction, reaction, KineticLaw, kineticLaw, KineticLaw, kinetic_law);
^
doc.c:193:26: note: expanded from macro 'SET_XML_ATTR_OBJ'
#define SET_XML_ATTR_OBJ SET_XML_ATTR_OBJ_NOCHECK
^
doc.c:139:4: note: expanded from macro 'SET_XML_ATTR_OBJ_NOCHECK'
({ \
^
doc.c:579:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Reaction, reaction, Reversible, reversible, LOGICAL_SCALAR);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:580:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Reaction, reaction, Fast, fast, LOGICAL_SCALAR);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:603:5: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Rule, rule, Variable, variable, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:610:5: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Rule, rule, Variable, variable, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:615:5: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Rule, rule, Units, units, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:647:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR_OBJ(Rule, rule, Math, math, ASTNode, ast_node);
^
doc.c:193:26: note: expanded from macro 'SET_XML_ATTR_OBJ'
#define SET_XML_ATTR_OBJ SET_XML_ATTR_OBJ_NOCHECK
^
doc.c:139:4: note: expanded from macro 'SET_XML_ATTR_OBJ_NOCHECK'
({ \
^
doc.c:665:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(EventAssignment, event_assignment, Variable, variable, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:666:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR_OBJ(EventAssignment, event_assignment, Math, math, ASTNode, ast_node);
^
doc.c:193:26: note: expanded from macro 'SET_XML_ATTR_OBJ'
#define SET_XML_ATTR_OBJ SET_XML_ATTR_OBJ_NOCHECK
^
doc.c:139:4: note: expanded from macro 'SET_XML_ATTR_OBJ_NOCHECK'
({ \
^
doc.c:685:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR_OBJ(Trigger, trigger, Math, math, ASTNode, ast_node);
^
doc.c:193:26: note: expanded from macro 'SET_XML_ATTR_OBJ'
#define SET_XML_ATTR_OBJ SET_XML_ATTR_OBJ_NOCHECK
^
doc.c:139:4: note: expanded from macro 'SET_XML_ATTR_OBJ_NOCHECK'
({ \
^
doc.c:702:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR_OBJ(Delay, delay, Math, math, ASTNode, ast_node);
^
doc.c:193:26: note: expanded from macro 'SET_XML_ATTR_OBJ'
#define SET_XML_ATTR_OBJ SET_XML_ATTR_OBJ_NOCHECK
^
doc.c:139:4: note: expanded from macro 'SET_XML_ATTR_OBJ_NOCHECK'
({ \
^
doc.c:721:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Event, event, Id, id, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:722:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Event, event, Name, name, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:724:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR_OBJ(Event, event, Delay, eventDelay, Delay, delay);
^
doc.c:193:26: note: expanded from macro 'SET_XML_ATTR_OBJ'
#define SET_XML_ATTR_OBJ SET_XML_ATTR_OBJ_NOCHECK
^
doc.c:139:4: note: expanded from macro 'SET_XML_ATTR_OBJ_NOCHECK'
({ \
^
doc.c:725:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR_OBJ(Event, event, Trigger, trigger, Trigger, trigger);
^
doc.c:193:26: note: expanded from macro 'SET_XML_ATTR_OBJ'
#define SET_XML_ATTR_OBJ SET_XML_ATTR_OBJ_NOCHECK
^
doc.c:139:4: note: expanded from macro 'SET_XML_ATTR_OBJ_NOCHECK'
({ \
^
doc.c:730:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Event, event, TimeUnits, timeUnits, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:731:3: warning: use of GNU statement expression extension [-Wgnu]
ADD_LIST(Event, event, EventAssignment, eventAssignments, EventAssignment, event_assignment);
^
doc.c:195:18: note: expanded from macro 'ADD_LIST'
#define ADD_LIST ADD_LIST_NOCHECK
^
doc.c:127:4: note: expanded from macro 'ADD_LIST_NOCHECK'
({ \
^
doc.c:971:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR_OBJ(InitialAssignment, initial_assignment, Math, math, ASTNode, ast_node);
^
doc.c:193:26: note: expanded from macro 'SET_XML_ATTR_OBJ'
#define SET_XML_ATTR_OBJ SET_XML_ATTR_OBJ_NOCHECK
^
doc.c:139:4: note: expanded from macro 'SET_XML_ATTR_OBJ_NOCHECK'
({ \
^
doc.c:972:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(InitialAssignment, initial_assignment, Symbol, symbol, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:989:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR_OBJ(Constraint, constraint, Math, math, ASTNode, ast_node);
^
doc.c:193:26: note: expanded from macro 'SET_XML_ATTR_OBJ'
#define SET_XML_ATTR_OBJ SET_XML_ATTR_OBJ_NOCHECK
^
doc.c:139:4: note: expanded from macro 'SET_XML_ATTR_OBJ_NOCHECK'
({ \
^
doc.c:990:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Constraint, constraint, Message, message, rsbml_build_doc_xml_node);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:1008:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(ModelCreator, model_creator, FamilyName, familyName, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:1009:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(ModelCreator, model_creator, GivenName, givenName, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:1010:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(ModelCreator, model_creator, Email, email, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:1011:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(ModelCreator, model_creator, Organisation, organization, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:1027:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR_OBJ(ModelHistory, model_history, CreatedDate, createdDate, Date,
^
doc.c:193:26: note: expanded from macro 'SET_XML_ATTR_OBJ'
#define SET_XML_ATTR_OBJ SET_XML_ATTR_OBJ_NOCHECK
^
doc.c:139:4: note: expanded from macro 'SET_XML_ATTR_OBJ_NOCHECK'
({ \
^
doc.c:1029:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR_OBJ(ModelHistory, model_history, ModifiedDate, modifiedDate,
^
doc.c:193:26: note: expanded from macro 'SET_XML_ATTR_OBJ'
#define SET_XML_ATTR_OBJ SET_XML_ATTR_OBJ_NOCHECK
^
doc.c:139:4: note: expanded from macro 'SET_XML_ATTR_OBJ_NOCHECK'
({ \
^
doc.c:1031:3: warning: use of GNU statement expression extension [-Wgnu]
ADD_LIST(ModelHistory, model_history, Creator, creators, ModelCreator,
^
doc.c:195:18: note: expanded from macro 'ADD_LIST'
#define ADD_LIST ADD_LIST_NOCHECK
^
doc.c:127:4: note: expanded from macro 'ADD_LIST_NOCHECK'
({ \
^
doc.c:1054:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Model, model, Id, id, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:1055:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR(Model, model, Name, name, STRING);
^
doc.c:194:22: note: expanded from macro 'SET_XML_ATTR'
#define SET_XML_ATTR SET_XML_ATTR_NOCHECK
^
doc.c:150:4: note: expanded from macro 'SET_XML_ATTR_NOCHECK'
({ \
^
doc.c:1057:3: warning: use of GNU statement expression extension [-Wgnu]
ADD_LIST(Model, model, Species, species, Species, species);
^
doc.c:195:18: note: expanded from macro 'ADD_LIST'
#define ADD_LIST ADD_LIST_NOCHECK
^
doc.c:127:4: note: expanded from macro 'ADD_LIST_NOCHECK'
({ \
^
doc.c:1058:3: warning: use of GNU statement expression extension [-Wgnu]
ADD_LIST(Model, model, FunctionDefinition, functionDefinitions,
^
doc.c:195:18: note: expanded from macro 'ADD_LIST'
#define ADD_LIST ADD_LIST_NOCHECK
^
doc.c:127:4: note: expanded from macro 'ADD_LIST_NOCHECK'
({ \
^
doc.c:1060:3: warning: use of GNU statement expression extension [-Wgnu]
ADD_LIST(Model, model, UnitDefinition, unitDefinitions, UnitDefinition,
^
doc.c:195:18: note: expanded from macro 'ADD_LIST'
#define ADD_LIST ADD_LIST_NOCHECK
^
doc.c:127:4: note: expanded from macro 'ADD_LIST_NOCHECK'
({ \
^
doc.c:1062:3: warning: use of GNU statement expression extension [-Wgnu]
ADD_LIST(Model, model, Compartment, compartments, Compartment, compartment);
^
doc.c:195:18: note: expanded from macro 'ADD_LIST'
#define ADD_LIST ADD_LIST_NOCHECK
^
doc.c:127:4: note: expanded from macro 'ADD_LIST_NOCHECK'
({ \
^
doc.c:1063:3: warning: use of GNU statement expression extension [-Wgnu]
ADD_LIST(Model, model, Parameter, parameters, Parameter, parameter);
^
doc.c:195:18: note: expanded from macro 'ADD_LIST'
#define ADD_LIST ADD_LIST_NOCHECK
^
doc.c:127:4: note: expanded from macro 'ADD_LIST_NOCHECK'
({ \
^
doc.c:1064:3: warning: use of GNU statement expression extension [-Wgnu]
ADD_LIST(Model, model, Rule, rules, Rule, rule);
^
doc.c:195:18: note: expanded from macro 'ADD_LIST'
#define ADD_LIST ADD_LIST_NOCHECK
^
doc.c:127:4: note: expanded from macro 'ADD_LIST_NOCHECK'
({ \
^
doc.c:1065:3: warning: use of GNU statement expression extension [-Wgnu]
ADD_LIST(Model, model, Reaction, reactions, Reaction, reaction);
^
doc.c:195:18: note: expanded from macro 'ADD_LIST'
#define ADD_LIST ADD_LIST_NOCHECK
^
doc.c:127:4: note: expanded from macro 'ADD_LIST_NOCHECK'
({ \
^
doc.c:1066:3: warning: use of GNU statement expression extension [-Wgnu]
ADD_LIST(Model, model, Event, events, Event, event);
^
doc.c:195:18: note: expanded from macro 'ADD_LIST'
#define ADD_LIST ADD_LIST_NOCHECK
^
doc.c:127:4: note: expanded from macro 'ADD_LIST_NOCHECK'
({ \
^
doc.c:1068:3: warning: use of GNU statement expression extension [-Wgnu]
ADD_LIST(Model, model, SpeciesType, speciesTypes, SpeciesType, species_type);
^
doc.c:195:18: note: expanded from macro 'ADD_LIST'
#define ADD_LIST ADD_LIST_NOCHECK
^
doc.c:127:4: note: expanded from macro 'ADD_LIST_NOCHECK'
({ \
^
doc.c:1069:3: warning: use of GNU statement expression extension [-Wgnu]
ADD_LIST(Model, model, CompartmentType, compartmentTypes, CompartmentType,
^
doc.c:195:18: note: expanded from macro 'ADD_LIST'
#define ADD_LIST ADD_LIST_NOCHECK
^
doc.c:127:4: note: expanded from macro 'ADD_LIST_NOCHECK'
({ \
^
doc.c:1071:3: warning: use of GNU statement expression extension [-Wgnu]
ADD_LIST(Model, model, InitialAssignment, initialAssignments,
^
doc.c:195:18: note: expanded from macro 'ADD_LIST'
#define ADD_LIST ADD_LIST_NOCHECK
^
doc.c:127:4: note: expanded from macro 'ADD_LIST_NOCHECK'
({ \
^
doc.c:1073:3: warning: use of GNU statement expression extension [-Wgnu]
ADD_LIST(Model, model, Constraint, constraints, Constraint, constraint);
^
doc.c:195:18: note: expanded from macro 'ADD_LIST'
#define ADD_LIST ADD_LIST_NOCHECK
^
doc.c:127:4: note: expanded from macro 'ADD_LIST_NOCHECK'
({ \
^
doc.c:1077:3: warning: use of GNU statement expression extension [-Wgnu]
SET_XML_ATTR_OBJ(Model, model, ModelHistory, modelHistory, ModelHistory,
^
doc.c:193:26: note: expanded from macro 'SET_XML_ATTR_OBJ'
#define SET_XML_ATTR_OBJ SET_XML_ATTR_OBJ_NOCHECK
^
doc.c:139:4: note: expanded from macro 'SET_XML_ATTR_OBJ_NOCHECK'
({ \
^
doc.c:1107:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
level = INTEGER_SCALAR(r_level);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
doc.c:4:27: note: expanded from macro 'INTEGER_SCALAR'
#define INTEGER_SCALAR(x) INTEGER(x)[0]
^˜˜˜˜˜˜˜˜˜˜˜˜
doc.c:1109:15: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
version = INTEGER_SCALAR(r_version);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
doc.c:4:27: note: expanded from macro 'INTEGER_SCALAR'
#define INTEGER_SCALAR(x) INTEGER(x)[0]
^˜˜˜˜˜˜˜˜˜˜˜˜
107 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include/libxml2 -I/usr/local/include -DLIBSBML3 -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c dom.c -o dom.o
dom.c:168:42: warning: use of GNU statement expression extension [-Wgnu]
SET_SLOT(r_s_base, install("cvTerms"), LIST_OF(s_base, SBase, cvterm, CVTerm, NULL));
^
dom.c:6:2: note: expanded from macro 'LIST_OF'
({ \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:168:58: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
SET_SLOT(r_s_base, install("cvTerms"), LIST_OF(s_base, SBase, cvterm, CVTerm, NULL));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:7:16: note: expanded from macro 'LIST_OF'
int i, len = class ## _getNum ## field ## s(var); \
^
<scratch space>:30:1: note: expanded from macro 'SBase'
SBase_getNumCVTerms
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:168:42: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
SET_SLOT(r_s_base, install("cvTerms"), LIST_OF(s_base, SBase, cvterm, CVTerm, NULL));
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:13:75: note: expanded from macro 'LIST_OF'
SEXP r_element = rsbml_build_dom_ ## func(class ## _get ## field(var, i)); \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:247:5: warning: use of GNU statement expression extension [-Wgnu]
SET_MATH(KineticLaw, kinetic_law, Math, math);
^
dom.c:37:45: note: expanded from macro 'SET_MATH'
#define SET_MATH(class, var, Field, field) ({ \
^
dom.c:256:5: warning: use of GNU statement expression extension [-Wgnu]
LIST_OF(kinetic_law, KineticLaw, parameter, Parameter, "id"));
^
dom.c:6:2: note: expanded from macro 'LIST_OF'
({ \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:256:26: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
LIST_OF(kinetic_law, KineticLaw, parameter, Parameter, "id"));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:7:16: note: expanded from macro 'LIST_OF'
int i, len = class ## _getNum ## field ## s(var); \
^
<scratch space>:33:1: note: expanded from macro 'KineticLaw'
KineticLaw_getNumParameters
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:256:5: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
LIST_OF(kinetic_law, KineticLaw, parameter, Parameter, "id"));
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:13:75: note: expanded from macro 'LIST_OF'
SEXP r_element = rsbml_build_dom_ ## func(class ## _get ## field(var, i)); \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:304:3: warning: use of GNU statement expression extension [-Wgnu]
SET_MATH(StoichiometryMath, stoichiometry_math, Math, math);
^
dom.c:37:45: note: expanded from macro 'SET_MATH'
#define SET_MATH(class, var, Field, field) ({ \
^
dom.c:400:46: warning: use of GNU statement expression extension [-Wgnu]
SET_SLOT(r_reaction, install("reactants"), LIST_OF(reaction, Reaction, species_reference, Reactant, "species"));
^
dom.c:6:2: note: expanded from macro 'LIST_OF'
({ \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:400:64: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
SET_SLOT(r_reaction, install("reactants"), LIST_OF(reaction, Reaction, species_reference, Reactant, "species"));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:7:16: note: expanded from macro 'LIST_OF'
int i, len = class ## _getNum ## field ## s(var); \
^
<scratch space>:33:1: note: expanded from macro 'Reaction'
Reaction_getNumReactants
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:400:46: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
SET_SLOT(r_reaction, install("reactants"), LIST_OF(reaction, Reaction, species_reference, Reactant, "species"));
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:13:75: note: expanded from macro 'LIST_OF'
SEXP r_element = rsbml_build_dom_ ## func(class ## _get ## field(var, i)); \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:401:45: warning: use of GNU statement expression extension [-Wgnu]
SET_SLOT(r_reaction, install("products"), LIST_OF(reaction, Reaction, species_reference, Product, "species"));
^
dom.c:6:2: note: expanded from macro 'LIST_OF'
({ \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:401:63: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
SET_SLOT(r_reaction, install("products"), LIST_OF(reaction, Reaction, species_reference, Product, "species"));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:7:16: note: expanded from macro 'LIST_OF'
int i, len = class ## _getNum ## field ## s(var); \
^
<scratch space>:33:1: note: expanded from macro 'Reaction'
Reaction_getNumProducts
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:401:45: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
SET_SLOT(r_reaction, install("products"), LIST_OF(reaction, Reaction, species_reference, Product, "species"));
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:13:75: note: expanded from macro 'LIST_OF'
SEXP r_element = rsbml_build_dom_ ## func(class ## _get ## field(var, i)); \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:402:46: warning: use of GNU statement expression extension [-Wgnu]
SET_SLOT(r_reaction, install("modifiers"), LIST_OF(reaction, Reaction, modifier_species_reference, Modifier, "species"));
^
dom.c:6:2: note: expanded from macro 'LIST_OF'
({ \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:402:64: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
SET_SLOT(r_reaction, install("modifiers"), LIST_OF(reaction, Reaction, modifier_species_reference, Modifier, "species"));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:7:16: note: expanded from macro 'LIST_OF'
int i, len = class ## _getNum ## field ## s(var); \
^
<scratch space>:33:1: note: expanded from macro 'Reaction'
Reaction_getNumModifiers
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:402:46: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
SET_SLOT(r_reaction, install("modifiers"), LIST_OF(reaction, Reaction, modifier_species_reference, Modifier, "species"));
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:13:75: note: expanded from macro 'LIST_OF'
SEXP r_element = rsbml_build_dom_ ## func(class ## _get ## field(var, i)); \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:422:19: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
ScalarInteger(Compartment_getSpatialDimensions(compartment)));
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:472:49: warning: use of GNU statement expression extension [-Wgnu]
SET_SLOT(r_unit_definition, install("units"), LIST_OF(unit_definition, UnitDefinition, unit, Unit, NULL));
^
dom.c:6:2: note: expanded from macro 'LIST_OF'
({ \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:472:74: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
SET_SLOT(r_unit_definition, install("units"), LIST_OF(unit_definition, UnitDefinition, unit, Unit, NULL));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:7:16: note: expanded from macro 'LIST_OF'
int i, len = class ## _getNum ## field ## s(var); \
^
<scratch space>:33:1: note: expanded from macro 'UnitDefinition'
UnitDefinition_getNumUnits
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:472:49: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
SET_SLOT(r_unit_definition, install("units"), LIST_OF(unit_definition, UnitDefinition, unit, Unit, NULL));
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:13:75: note: expanded from macro 'LIST_OF'
SEXP r_element = rsbml_build_dom_ ## func(class ## _get ## field(var, i)); \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:493:5: warning: use of GNU statement expression extension [-Wgnu]
SET_MATH(FunctionDefinition, function_definition, Math, math);
^
dom.c:37:45: note: expanded from macro 'SET_MATH'
#define SET_MATH(class, var, Field, field) ({ \
^
dom.c:525:8: warning: embedding a directive within macro arguments has undefined behavior [-Wembedded-directive]
#ifdef LIBSBML3
^
dom.c:534:6: warning: embedding a directive within macro arguments has undefined behavior [-Wembedded-directive]
#ifdef LIBSBML3
^
dom.c:543:6: warning: embedding a directive within macro arguments has undefined behavior [-Wembedded-directive]
#ifdef LIBSBML3
^
dom.c:585:5: warning: use of GNU statement expression extension [-Wgnu]
SET_MATH(Rule, rule, Math, math);
^
dom.c:37:45: note: expanded from macro 'SET_MATH'
#define SET_MATH(class, var, Field, field) ({ \
^
dom.c:605:5: warning: use of GNU statement expression extension [-Wgnu]
SET_MATH(EventAssignment, event_assignment, Math, math);
^
dom.c:37:45: note: expanded from macro 'SET_MATH'
#define SET_MATH(class, var, Field, field) ({ \
^
dom.c:622:3: warning: use of GNU statement expression extension [-Wgnu]
SET_MATH(Delay, delay, Math, math);
^
dom.c:37:45: note: expanded from macro 'SET_MATH'
#define SET_MATH(class, var, Field, field) ({ \
^
dom.c:637:3: warning: use of GNU statement expression extension [-Wgnu]
SET_MATH(Trigger, trigger, Math, math);
^
dom.c:37:45: note: expanded from macro 'SET_MATH'
#define SET_MATH(class, var, Field, field) ({ \
^
dom.c:676:5: warning: use of GNU statement expression extension [-Wgnu]
LIST_OF(event, Event, event_assignment, EventAssignment, NULL));
^
dom.c:6:2: note: expanded from macro 'LIST_OF'
({ \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:676:20: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
LIST_OF(event, Event, event_assignment, EventAssignment, NULL));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:7:16: note: expanded from macro 'LIST_OF'
int i, len = class ## _getNum ## field ## s(var); \
^
<scratch space>:33:1: note: expanded from macro 'Event'
Event_getNumEventAssignments
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:676:5: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
LIST_OF(event, Event, event_assignment, EventAssignment, NULL));
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:13:75: note: expanded from macro 'LIST_OF'
SEXP r_element = rsbml_build_dom_ ## func(class ## _get ## field(var, i)); \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:988:3: warning: use of GNU statement expression extension [-Wgnu]
SET_MATH(InitialAssignment, initial_assignment, Math, math);
^
dom.c:37:45: note: expanded from macro 'SET_MATH'
#define SET_MATH(class, var, Field, field) ({ \
^
dom.c:1005:3: warning: use of GNU statement expression extension [-Wgnu]
SET_MATH(Constraint, constraint, Math, math);
^
dom.c:37:45: note: expanded from macro 'SET_MATH'
#define SET_MATH(class, var, Field, field) ({ \
^
dom.c:1045:5: warning: use of GNU statement expression extension [-Wgnu]
LIST_OF(model_history, ModelHistory, model_creator, Creator, NULL));
^
dom.c:6:2: note: expanded from macro 'LIST_OF'
({ \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1045:28: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
LIST_OF(model_history, ModelHistory, model_creator, Creator, NULL));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:7:16: note: expanded from macro 'LIST_OF'
int i, len = class ## _getNum ## field ## s(var); \
^
<scratch space>:33:1: note: expanded from macro 'ModelHistory'
ModelHistory_getNumCreators
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1045:5: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
LIST_OF(model_history, ModelHistory, model_creator, Creator, NULL));
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:13:75: note: expanded from macro 'LIST_OF'
SEXP r_element = rsbml_build_dom_ ## func(class ## _get ## field(var, i)); \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1074:26: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
int i, num_species = Model_getNumSpecies(model);
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:1079:72: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
SEXP r_element = rsbml_build_dom_species(Model_getSpecies(model, i));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
dom.c:1088:43: warning: use of GNU statement expression extension [-Wgnu]
SET_SLOT(r_model, install("reactions"), LIST_OF(model, Model, reaction, Reaction, "id"));
^
dom.c:6:2: note: expanded from macro 'LIST_OF'
({ \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1088:58: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
SET_SLOT(r_model, install("reactions"), LIST_OF(model, Model, reaction, Reaction, "id"));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:7:16: note: expanded from macro 'LIST_OF'
int i, len = class ## _getNum ## field ## s(var); \
^
<scratch space>:33:1: note: expanded from macro 'Model'
Model_getNumReactions
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1088:43: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
SET_SLOT(r_model, install("reactions"), LIST_OF(model, Model, reaction, Reaction, "id"));
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:13:75: note: expanded from macro 'LIST_OF'
SEXP r_element = rsbml_build_dom_ ## func(class ## _get ## field(var, i)); \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1089:46: warning: use of GNU statement expression extension [-Wgnu]
SET_SLOT(r_model, install("compartments"), LIST_OF(model, Model, compartment, Compartment, "id"));
^
dom.c:6:2: note: expanded from macro 'LIST_OF'
({ \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1089:61: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
SET_SLOT(r_model, install("compartments"), LIST_OF(model, Model, compartment, Compartment, "id"));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:7:16: note: expanded from macro 'LIST_OF'
int i, len = class ## _getNum ## field ## s(var); \
^
<scratch space>:33:1: note: expanded from macro 'Model'
Model_getNumCompartments
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1089:46: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
SET_SLOT(r_model, install("compartments"), LIST_OF(model, Model, compartment, Compartment, "id"));
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:13:75: note: expanded from macro 'LIST_OF'
SEXP r_element = rsbml_build_dom_ ## func(class ## _get ## field(var, i)); \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1090:49: warning: use of GNU statement expression extension [-Wgnu]
SET_SLOT(r_model, install("unitDefinitions"), LIST_OF(model, Model, unit_definition, UnitDefinition, "id"));
^
dom.c:6:2: note: expanded from macro 'LIST_OF'
({ \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1090:64: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
SET_SLOT(r_model, install("unitDefinitions"), LIST_OF(model, Model, unit_definition, UnitDefinition, "id"));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:7:16: note: expanded from macro 'LIST_OF'
int i, len = class ## _getNum ## field ## s(var); \
^
<scratch space>:33:1: note: expanded from macro 'Model'
Model_getNumUnitDefinitions
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1090:49: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
SET_SLOT(r_model, install("unitDefinitions"), LIST_OF(model, Model, unit_definition, UnitDefinition, "id"));
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:13:75: note: expanded from macro 'LIST_OF'
SEXP r_element = rsbml_build_dom_ ## func(class ## _get ## field(var, i)); \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1091:53: warning: use of GNU statement expression extension [-Wgnu]
SET_SLOT(r_model, install("functionDefinitions"), LIST_OF(model, Model, function_definition, FunctionDefinition, "id"));
^
dom.c:6:2: note: expanded from macro 'LIST_OF'
({ \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1091:68: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
SET_SLOT(r_model, install("functionDefinitions"), LIST_OF(model, Model, function_definition, FunctionDefinition, "id"));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:7:16: note: expanded from macro 'LIST_OF'
int i, len = class ## _getNum ## field ## s(var); \
^
<scratch space>:33:1: note: expanded from macro 'Model'
Model_getNumFunctionDefinitions
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1091:53: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
SET_SLOT(r_model, install("functionDefinitions"), LIST_OF(model, Model, function_definition, FunctionDefinition, "id"));
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:13:75: note: expanded from macro 'LIST_OF'
SEXP r_element = rsbml_build_dom_ ## func(class ## _get ## field(var, i)); \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1092:44: warning: use of GNU statement expression extension [-Wgnu]
SET_SLOT(r_model, install("parameters"), LIST_OF(model, Model, parameter, Parameter, "id"));
^
dom.c:6:2: note: expanded from macro 'LIST_OF'
({ \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1092:59: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
SET_SLOT(r_model, install("parameters"), LIST_OF(model, Model, parameter, Parameter, "id"));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:7:16: note: expanded from macro 'LIST_OF'
int i, len = class ## _getNum ## field ## s(var); \
^
<scratch space>:33:1: note: expanded from macro 'Model'
Model_getNumParameters
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1092:44: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
SET_SLOT(r_model, install("parameters"), LIST_OF(model, Model, parameter, Parameter, "id"));
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:13:75: note: expanded from macro 'LIST_OF'
SEXP r_element = rsbml_build_dom_ ## func(class ## _get ## field(var, i)); \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1093:39: warning: use of GNU statement expression extension [-Wgnu]
SET_SLOT(r_model, install("rules"), LIST_OF(model, Model, rule, Rule, NULL));
^
dom.c:6:2: note: expanded from macro 'LIST_OF'
({ \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1093:54: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
SET_SLOT(r_model, install("rules"), LIST_OF(model, Model, rule, Rule, NULL));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:7:16: note: expanded from macro 'LIST_OF'
int i, len = class ## _getNum ## field ## s(var); \
^
<scratch space>:33:1: note: expanded from macro 'Model'
Model_getNumRules
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1093:39: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
SET_SLOT(r_model, install("rules"), LIST_OF(model, Model, rule, Rule, NULL));
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:13:75: note: expanded from macro 'LIST_OF'
SEXP r_element = rsbml_build_dom_ ## func(class ## _get ## field(var, i)); \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1094:40: warning: use of GNU statement expression extension [-Wgnu]
SET_SLOT(r_model, install("events"), LIST_OF(model, Model, event, Event, "id"));
^
dom.c:6:2: note: expanded from macro 'LIST_OF'
({ \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1094:55: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
SET_SLOT(r_model, install("events"), LIST_OF(model, Model, event, Event, "id"));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:7:16: note: expanded from macro 'LIST_OF'
int i, len = class ## _getNum ## field ## s(var); \
^
<scratch space>:33:1: note: expanded from macro 'Model'
Model_getNumEvents
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1094:40: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
SET_SLOT(r_model, install("events"), LIST_OF(model, Model, event, Event, "id"));
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:13:75: note: expanded from macro 'LIST_OF'
SEXP r_element = rsbml_build_dom_ ## func(class ## _get ## field(var, i)); \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1096:46: warning: use of GNU statement expression extension [-Wgnu]
SET_SLOT(r_model, install("speciesTypes"), LIST_OF(model, Model, species_type, SpeciesType, "id"));
^
dom.c:6:2: note: expanded from macro 'LIST_OF'
({ \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1096:61: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
SET_SLOT(r_model, install("speciesTypes"), LIST_OF(model, Model, species_type, SpeciesType, "id"));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:7:16: note: expanded from macro 'LIST_OF'
int i, len = class ## _getNum ## field ## s(var); \
^
<scratch space>:33:1: note: expanded from macro 'Model'
Model_getNumSpeciesTypes
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1096:46: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
SET_SLOT(r_model, install("speciesTypes"), LIST_OF(model, Model, species_type, SpeciesType, "id"));
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:13:75: note: expanded from macro 'LIST_OF'
SEXP r_element = rsbml_build_dom_ ## func(class ## _get ## field(var, i)); \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1097:50: warning: use of GNU statement expression extension [-Wgnu]
SET_SLOT(r_model, install("compartmentTypes"), LIST_OF(model, Model, compartment_type, CompartmentType, "id"));
^
dom.c:6:2: note: expanded from macro 'LIST_OF'
({ \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1097:65: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
SET_SLOT(r_model, install("compartmentTypes"), LIST_OF(model, Model, compartment_type, CompartmentType, "id"));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:7:16: note: expanded from macro 'LIST_OF'
int i, len = class ## _getNum ## field ## s(var); \
^
<scratch space>:33:1: note: expanded from macro 'Model'
Model_getNumCompartmentTypes
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1097:50: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
SET_SLOT(r_model, install("compartmentTypes"), LIST_OF(model, Model, compartment_type, CompartmentType, "id"));
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:13:75: note: expanded from macro 'LIST_OF'
SEXP r_element = rsbml_build_dom_ ## func(class ## _get ## field(var, i)); \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1098:52: warning: use of GNU statement expression extension [-Wgnu]
SET_SLOT(r_model, install("initialAssignments"), LIST_OF(model, Model, initial_assignment, InitialAssignment, NULL));
^
dom.c:6:2: note: expanded from macro 'LIST_OF'
({ \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1098:67: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
SET_SLOT(r_model, install("initialAssignments"), LIST_OF(model, Model, initial_assignment, InitialAssignment, NULL));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:7:16: note: expanded from macro 'LIST_OF'
int i, len = class ## _getNum ## field ## s(var); \
^
<scratch space>:33:1: note: expanded from macro 'Model'
Model_getNumInitialAssignments
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1098:52: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
SET_SLOT(r_model, install("initialAssignments"), LIST_OF(model, Model, initial_assignment, InitialAssignment, NULL));
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:13:75: note: expanded from macro 'LIST_OF'
SEXP r_element = rsbml_build_dom_ ## func(class ## _get ## field(var, i)); \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1099:45: warning: use of GNU statement expression extension [-Wgnu]
SET_SLOT(r_model, install("constraints"), LIST_OF(model, Model, constraint, Constraint, "id"));
^
dom.c:6:2: note: expanded from macro 'LIST_OF'
({ \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1099:60: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
SET_SLOT(r_model, install("constraints"), LIST_OF(model, Model, constraint, Constraint, "id"));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:7:16: note: expanded from macro 'LIST_OF'
int i, len = class ## _getNum ## field ## s(var); \
^
<scratch space>:33:1: note: expanded from macro 'Model'
Model_getNumConstraints
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1099:45: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
SET_SLOT(r_model, install("constraints"), LIST_OF(model, Model, constraint, Constraint, "id"));
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
dom.c:13:75: note: expanded from macro 'LIST_OF'
SEXP r_element = rsbml_build_dom_ ## func(class ## _get ## field(var, i)); \
^
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1117:51: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
SET_SLOT(r_dom, install("level"), ScalarInteger(SBMLDocument_getLevel(doc)));
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
dom.c:1118:49: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
SET_SLOT(r_dom, install("ver"), ScalarInteger(SBMLDocument_getVersion(doc)));
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:140:61: note: expanded from macro 'SET_SLOT'
#define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value)
^
74 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include/libxml2 -I/usr/local/include -DLIBSBML3 -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c graph.c -o graph.o
graph.c:28:17: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
num_species = Model_getNumSpecies(model);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
graph.c:29:19: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
num_reactions = Model_getNumReactions(model);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
graph.c:61:28: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
int j, num_reactants = Reaction_getNumReactants(reaction);
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
graph.c:62:25: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
int num_modifiers = Reaction_getNumModifiers(reaction);
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
graph.c:66:33: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
out_count[reaction_index] = Reaction_getNumProducts(reaction);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
graph.c:69:68: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
(SimpleSpeciesReference_t *)Reaction_getReactant(reaction, j));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
graph.c:5:74: note: expanded from macro 'SimpleSpeciesReference_getSpecies'
#define SimpleSpeciesReference_getSpecies(x) SpeciesReference_getSpecies(x)
^
graph.c:75:68: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
(SimpleSpeciesReference_t *)Reaction_getModifier(reaction, j));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
graph.c:5:74: note: expanded from macro 'SimpleSpeciesReference_getSpecies'
#define SimpleSpeciesReference_getSpecies(x) SpeciesReference_getSpecies(x)
^
graph.c:94:28: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
int j, num_reactants = Reaction_getNumReactants(reaction);
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
graph.c:95:25: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
int num_modifiers = Reaction_getNumModifiers(reaction);
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
graph.c:96:24: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
int num_products = Reaction_getNumProducts(reaction);
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
graph.c:103:68: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
(SimpleSpeciesReference_t *)Reaction_getReactant(reaction, j));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
graph.c:5:74: note: expanded from macro 'SimpleSpeciesReference_getSpecies'
#define SimpleSpeciesReference_getSpecies(x) SpeciesReference_getSpecies(x)
^
graph.c:110:68: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
(SimpleSpeciesReference_t *)Reaction_getModifier(reaction, j));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
graph.c:5:74: note: expanded from macro 'SimpleSpeciesReference_getSpecies'
#define SimpleSpeciesReference_getSpecies(x) SpeciesReference_getSpecies(x)
^
graph.c:117:67: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
(SimpleSpeciesReference_t *)Reaction_getProduct(reaction, j));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
graph.c:5:74: note: expanded from macro 'SimpleSpeciesReference_getSpecies'
#define SimpleSpeciesReference_getSpecies(x) SpeciesReference_getSpecies(x)
^
graph.c:39:50: warning: implicit conversion loses integer precision: 'long' to 'unsigned int' [-Wshorten-64-to-32]
Species_t *species = Model_getSpecies(model, i);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
graph.c:46:53: warning: implicit conversion loses integer precision: 'long' to 'unsigned int' [-Wshorten-64-to-32]
Reaction_t *reaction = Model_getReaction(model, i);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
graph.c:60:53: warning: implicit conversion loses integer precision: 'long' to 'unsigned int' [-Wshorten-64-to-32]
Reaction_t *reaction = Model_getReaction(model, i);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
graph.c:93:53: warning: implicit conversion loses integer precision: 'long' to 'unsigned int' [-Wshorten-64-to-32]
Reaction_t *reaction = Model_getReaction(model, i);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
graph.c:106:93: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
INTEGER(VECTOR_ELT(VECTOR_ELT(r_edges, index), 0))[out_pos[index]++] = reaction_index + 1;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
graph.c:113:93: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
INTEGER(VECTOR_ELT(VECTOR_ELT(r_edges, index), 0))[out_pos[index]++] = reaction_index + 1;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
graph.c:120:40: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
INTEGER(reaction_out)[j] = index + 1;
˜ ˜˜˜˜˜˜^˜˜
20 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include/libxml2 -I/usr/local/include -DLIBSBML3 -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c init.c -o init.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include/libxml2 -I/usr/local/include -DLIBSBML3 -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c io.c -o io.o
io.c:33:23: warning: implicit conversion changes signedness: 'int' to 'Rboolean' [-Wsign-conversion]
Rboolean validate = LOGICAL(r_validate)[0];
˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
io.c:42:23: warning: implicit conversion changes signedness: 'int' to 'Rboolean' [-Wsign-conversion]
Rboolean validate = LOGICAL(r_validate)[0];
˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
2 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include/libxml2 -I/usr/local/include -DLIBSBML3 -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c layoutWrappers.cpp -o layoutWrappers.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include/libxml2 -I/usr/local/include -DLIBSBML3 -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c mathml.c -o mathml.o
mathml.c:57:20: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
int i, num = ASTNode_getNumChildren(node);
˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
mathml.c:61:64: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
SET_TAG(pargs, install(ASTNode_getName(ASTNode_getChild(node, i))));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
mathml.c:66:61: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
rmathml_SEXP(ASTNode_getChild(node, num))));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜
mathml.c:56:12: warning: unused variable 'closure' [-Wunused-variable]
SEXP closure, pargs;
^
mathml.c:151:20: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
int i, num = ASTNode_getNumChildren(node), nprotects = 1;
˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
mathml.c:153:55: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
sym = rmathml_SEXP(ASTNode_getChild(node, num - 1));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜^˜˜
mathml.c:155:76: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
sym = lang3(install("if"), rmathml_SEXP(ASTNode_getChild(node, num - 1)),
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜^˜˜
mathml.c:156:61: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
rmathml_SEXP(ASTNode_getChild(node, num - 2)));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜^˜˜
mathml.c:160:65: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
rmathml_SEXP(ASTNode_getChild(node, i)),
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s) Rf_protect(s)
^
mathml.c:161:66: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
rmathml_SEXP(ASTNode_getChild(node, i-1)), sym));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜^˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s) Rf_protect(s)
^
mathml.c:243:18: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
int i, num = ASTNode_getNumChildren(node);
˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
mathml.c:250:55: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
SETCAR(fun, rmathml_SEXP(ASTNode_getChild(node, i)));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
12 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include/libxml2 -I/usr/local/include -DLIBSBML3 -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c simulate.c -o simulate.o
simulate.c:108:7: warning: ISO C requires a translation unit to contain at least one declaration [-Wempty-translation-unit]
#endif
^
1 warning generated.
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o rsbml.so StringMap.o check.o doc.o dom.o graph.o init.o io.o layoutWrappers.o mathml.o simulate.o -L/usr/local/lib -lpthread -licucore -lz -lbz2 -lsbml -lstdc++ -lm -lxml2 -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/rsbml.buildbin-libdir/rsbml/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (rsbml)
>>>>>>>
>>>>>>> FIXING LINKS FOR rsbml.buildbin-libdir/rsbml/libs//rsbml.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "rsbml.buildbin-libdir/rsbml/libs//rsbml.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "rsbml.buildbin-libdir/rsbml/libs//rsbml.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "rsbml.buildbin-libdir/rsbml/libs//rsbml.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "rsbml.buildbin-libdir/rsbml/libs//rsbml.so"