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Package 501/671HostnameOS / ArchBUILDCHECKBUILD BIN
pRoloc 1.0.0
Laurent Gatto
Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/pRoloc
Last Changed Rev: 75263 / Revision: 76155
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ OK ] OK 

Summary

Package: pRoloc
Version: 1.0.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch pRoloc_1.0.0.tar.gz
StartedAt: 2013-05-01 09:33:41 -0700 (Wed, 01 May 2013)
EndedAt: 2013-05-01 09:45:00 -0700 (Wed, 01 May 2013)
EllapsedTime: 679.3 seconds
RetCode: 0
Status:  OK 
CheckDir: pRoloc.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/pRoloc.Rcheck'
* using R version 3.0.0 Patched (2013-04-08 r62531)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'pRoloc/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'pRoloc' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'pRoloc' can be installed ... [41s/43s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [80s/80s] OK
Examples with CPU or elapsed time > 5s
                         user system elapsed
perTurboClassification 17.950  0.133  18.217
rfClassification        8.121  0.234   8.415
nnetClassification      8.182  0.049   8.273
svmClassification       7.747  0.084   7.942
nbClassification        5.696  0.054   5.795
ksvmClassification      5.367  0.134   5.560
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'test-all.R' [212s/216s]
 [213s/216s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

pRoloc.Rcheck/00install.out:

* installing *source* package 'pRoloc' ...
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import 'alpha' when loading 'scales'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'alpha' when loading 'scales'
* DONE (pRoloc)

pRoloc.Rcheck/pRoloc-Ex.timings:

nameusersystemelapsed
GenRegRes-class0.0230.0070.030
chi2-methods0.0330.0120.044
empPvalues0.3180.0250.345
exprsToRatios-methods0.5580.0250.603
getMarkers0.0680.0110.078
getStockcol0.1340.0210.155
knnClassification1.8860.0401.949
ksvmClassification5.3670.1345.560
makeNaData2.4380.0392.494
minClassScore0.1320.0150.149
minMarkers0.1130.0150.129
nbClassification5.6960.0545.795
nnetClassification8.1820.0498.273
perTurboClassification17.950 0.13318.217
phenoDisco0.0070.0040.012
plot2D0.1080.0130.126
plotDist0.1750.0180.233
plsdaClassification0.0090.0060.015
rfClassification8.1210.2348.415
svmClassification7.7470.0847.942