Package: imageHTS

Version: 1.10.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch imageHTS_1.10.0.tar.gz

StartedAt: 2013-05-01 07:03:54 -0700 (Wed, 01 May 2013)

EndedAt: 2013-05-01 07:11:15 -0700 (Wed, 01 May 2013)

EllapsedTime: 440.8 seconds

RetCode: 0

Status:  OK

CheckDir: imageHTS.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/imageHTS.Rcheck'
* using R version 3.0.0 Patched (2013-04-08 r62531)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'imageHTS/DESCRIPTION' ... OK
* this is package 'imageHTS' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'imageHTS' can be installed ... [27s/29s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [173s/178s] OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
extractFeatures 48.761  4.428  55.259
countObjects    30.765  1.406  32.534
segmentWells    19.805  1.933  22.030
segmentYeastBF   9.328  2.177  11.684
getWellFeatures  8.269  0.094   8.444
zprime           6.169  0.055   6.308
getUnames        5.898  0.043   6.116
fileHTS          5.715  0.069   7.727
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/imageHTS.Rcheck/00check.log'
for details.

* installing *source* package 'imageHTS' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (imageHTS)

name	user	system	elapsed
collectCellFeatures	0.401	0.004	0.409
countObjects	30.765	1.406	32.534
extractFeatures	48.761	4.428	55.259
fileHTS	5.715	0.069	7.727
getImageConf	2.791	0.024	2.852
getUnames	5.898	0.043	6.116
getWellFeatures	8.269	0.094	8.444
highlightSegmentation	0.004	0.005	0.010
installCellPicker	4.666	0.064	4.830
makeCellHTS	0.007	0.013	0.020
parseDCF	0.009	0.008	0.023
parseImageConf	2.992	0.025	3.054
popCellPicker	2.966	0.017	2.999
prw2uname	0.017	0.016	0.033
readLearnTS	0.003	0.004	0.006
segmentATH	0.002	0.004	0.006
segmentWells	19.805	1.933	22.030
segmentYeastBF	9.328	2.177	11.684
summarizeWells	0.006	0.012	0.017
zprime	6.169	0.055	6.308