iBBiG 1.4.0
Aedin Culhane
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/iBBiG | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=iBBiG.buildbin-libdir iBBiG_1.4.0.tar.gz'
>>>>>>>
* installing *source* package 'iBBiG' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c R_init_iBBiG.c -o R_init_iBBiG.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c iBBiG.c -o iBBiG.o
iBBiG.c:105:31: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
sortedPop[j*noPop+i]=pop[j*noPop+order[i]];
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iBBiG.c:166:37: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
int mutThreshold=(double)RAND_MAX*mutation;
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iBBiG.c:252:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
poolPop[poolIndex] = malloc(sizeof(int) * noCov);
˜ ^˜˜˜˜
iBBiG.c:183:22: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
child[i]=pop[i*noPop+par1];
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iBBiG.c:193:22: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
child[i]=pop[i*noPop+par2];
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iBBiG.c:206:22: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
child[i]=pop[i*noPop+par1];
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iBBiG.c:213:22: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
child[i]=pop[i*noPop+par2];
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iBBiG.c:300:22: warning: implicit declaration of function 'time' is invalid in C99 [-Wimplicit-function-declaration]
srand((unsigned)time(NULL));
^
iBBiG.c:353:17: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
group[i]=pop[(i+1)*(*noPop)-1];
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9 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o iBBiG.so R_init_iBBiG.o iBBiG.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/iBBiG.buildbin-libdir/iBBiG/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (iBBiG)
>>>>>>>
>>>>>>> FIXING LINKS FOR iBBiG.buildbin-libdir/iBBiG/libs//iBBiG.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "iBBiG.buildbin-libdir/iBBiG/libs//iBBiG.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "iBBiG.buildbin-libdir/iBBiG/libs//iBBiG.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "iBBiG.buildbin-libdir/iBBiG/libs//iBBiG.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "iBBiG.buildbin-libdir/iBBiG/libs//iBBiG.so"