flowFP 1.18.0
Herb Holyst
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/flowFP | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=flowFP.buildbin-libdir flowFP_1.18.0.tar.gz'
>>>>>>>
* installing *source* package 'flowFP' ...
configure: creating ./config.status
config.status: creating src/Makevars
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c flowFP.c -o flowFP.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c init.c -o init.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c split_utils.c -o split_utils.o
split_utils.c:74:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
double *vals = malloc(sizeof(double) * lut->len);
˜ ˜˜˜˜˜^˜˜
split_utils.c:105:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
data = malloc(sizeof(double) * row_idx->len);
˜ ˜˜˜˜˜˜˜˜˜^˜˜
split_utils.c:170:14: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort(data, num_pts, sizeof(double), compare);
˜˜˜˜˜ ^˜˜˜˜˜˜
split_utils.c:214:26: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
lengths = (int *)calloc(num_splits, sizeof(int));
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
split_utils.c:223:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
lut = malloc(sizeof(CIVECTOR *) * num_splits);
˜ ^˜˜˜˜˜˜˜˜˜
split_utils.c:227:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
lut[i]->data = malloc(sizeof(int) * lengths[i]);
˜ ^˜˜˜˜˜˜˜˜˜
6 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o flowFP.so flowFP.o init.o split_utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/flowFP.buildbin-libdir/flowFP/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (flowFP)
>>>>>>>
>>>>>>> FIXING LINKS FOR flowFP.buildbin-libdir/flowFP/libs//flowFP.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "flowFP.buildbin-libdir/flowFP/libs//flowFP.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "flowFP.buildbin-libdir/flowFP/libs//flowFP.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "flowFP.buildbin-libdir/flowFP/libs//flowFP.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "flowFP.buildbin-libdir/flowFP/libs//flowFP.so"