Package: easyRNASeq

Version: 1.6.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch easyRNASeq_1.6.0.tar.gz

StartedAt: 2013-05-01 04:55:50 -0700 (Wed, 01 May 2013)

EndedAt: 2013-05-01 05:03:03 -0700 (Wed, 01 May 2013)

EllapsedTime: 432.2 seconds

RetCode: 0

Status:  OK

CheckDir: easyRNASeq.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/easyRNASeq.Rcheck'
* using R version 3.0.0 Patched (2013-04-08 r62531)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'easyRNASeq/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'easyRNASeq' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'easyRNASeq' can be installed ... [43s/46s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [22s/22s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'easyRNASeq' ...
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import 'coerce' when loading 'intervals'
Warning: replacing previous import 'initialize' when loading 'intervals'
Creating a generic function for 'print' from package 'base' in package 'easyRNASeq'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'coerce' when loading 'intervals'
Warning: replacing previous import 'initialize' when loading 'intervals'
* DONE (easyRNASeq)

name	user	system	elapsed
DESeq-edgeR-common-methods	0.892	0.010	0.919
DESeq-methods	0.014	0.005	0.019
GenomicRanges-methods	0.017	0.008	0.025
IRanges-methods	0.019	0.008	0.029
ShortRead-methods	0.031	0.013	0.044
easyRNASeq-accessors	0.010	0.004	0.015
easyRNASeq-annotation-methods	0.017	0.007	0.025
easyRNASeq-class	0.012	0.005	0.017
easyRNASeq-correction-methods	0.022	0.009	0.032
easyRNASeq-count	0.019	0.007	0.026
easyRNASeq-coverage-methods	0.020	0.007	0.027
easyRNASeq-easyRNASeq	0.021	0.008	0.030
easyRNASeq-island-methods	0.017	0.007	0.026
easyRNASeq-package	0.017	0.007	0.030
easyRNASeq-summarization-methods	0.016	0.006	0.023
edgeR-methods	0.007	0.004	0.011
genomeIntervals-methods	0.008	0.003	0.011
parallel-methods	0.008	0.003	0.011