cn.farms 1.8.0
Andreas Mitterecker
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/cn.farms | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | WARNINGS | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=cn.farms.buildbin-libdir cn.farms_1.8.0.tar.gz'
>>>>>>>
* installing *source* package 'cn.farms' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c R_init_cnfarms.c -o R_init_cnfarms.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c laplace.cpp -o laplace.o
laplace.cpp:275:10: warning: variable 'I1left' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
else if(argLeft >= 0.0 && argRight >= 0.0) {
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
laplace.cpp:364:36: note: uninitialized use occurs here
double I2left=(-leftMy/leftSigma)*I1left+I0left;
^˜˜˜˜˜
laplace.cpp:275:7: note: remove the 'if' if its condition is always true
else if(argLeft >= 0.0 && argRight >= 0.0) {
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
laplace.cpp:275:10: warning: variable 'I1left' is used uninitialized whenever '&&' condition is false [-Wsometimes-uninitialized]
else if(argLeft >= 0.0 && argRight >= 0.0) {
^˜˜˜˜˜˜˜˜˜˜˜˜˜
laplace.cpp:364:36: note: uninitialized use occurs here
double I2left=(-leftMy/leftSigma)*I1left+I0left;
^˜˜˜˜˜
laplace.cpp:275:10: note: remove the '&&' if its condition is always true
else if(argLeft >= 0.0 && argRight >= 0.0) {
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
laplace.cpp:198:15: note: initialize the variable 'I1left' to silence this warning
double I1left;
^
= 0.0
laplace.cpp:275:10: warning: variable 'I1right' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
else if(argLeft >= 0.0 && argRight >= 0.0) {
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
laplace.cpp:365:39: note: uninitialized use occurs here
double I2right=(-rightMy/rightSigma)*I1right+I0right;
^˜˜˜˜˜˜
laplace.cpp:275:7: note: remove the 'if' if its condition is always true
else if(argLeft >= 0.0 && argRight >= 0.0) {
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
laplace.cpp:275:10: warning: variable 'I1right' is used uninitialized whenever '&&' condition is false [-Wsometimes-uninitialized]
else if(argLeft >= 0.0 && argRight >= 0.0) {
^˜˜˜˜˜˜˜˜˜˜˜˜˜
laplace.cpp:365:39: note: uninitialized use occurs here
double I2right=(-rightMy/rightSigma)*I1right+I0right;
^˜˜˜˜˜˜
laplace.cpp:275:10: note: remove the '&&' if its condition is always true
else if(argLeft >= 0.0 && argRight >= 0.0) {
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
laplace.cpp:199:16: note: initialize the variable 'I1right' to silence this warning
double I1right;
^
= 0.0
laplace.cpp:442:6: warning: unused variable 'method' [-Wunused-variable]
int method=0;
^
5 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c sparse_farms.c -o sparse_farms.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o cn.farms.so R_init_cnfarms.o laplace.o sparse_farms.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/cn.farms.buildbin-libdir/cn.farms/libs
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (cn.farms)
>>>>>>>
>>>>>>> FIXING LINKS FOR cn.farms.buildbin-libdir/cn.farms/libs//cn.farms.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "cn.farms.buildbin-libdir/cn.farms/libs//cn.farms.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "cn.farms.buildbin-libdir/cn.farms/libs//cn.farms.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "cn.farms.buildbin-libdir/cn.farms/libs//cn.farms.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "cn.farms.buildbin-libdir/cn.farms/libs//cn.farms.so"