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Package 78/671HostnameOS / ArchBUILDCHECKBUILD BIN
biomvRCNS 1.0.1
Yang Du
Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/biomvRCNS
Last Changed Rev: 75774 / Revision: 76155
Last Changed Date: 2013-04-18 02:47:34 -0700 (Thu, 18 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ]

Summary

Package: biomvRCNS
Version: 1.0.1
Command: rm -rf biomvRCNS.buildbin-libdir && mkdir biomvRCNS.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh biomvRCNS_1.0.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R biomvRCNS.buildbin-libdir
StartedAt: 2013-05-01 12:09:21 -0700 (Wed, 01 May 2013)
EndedAt: 2013-05-01 12:10:04 -0700 (Wed, 01 May 2013)
EllapsedTime: 42.7 seconds
RetCode: 0
Status:  OK 
PackageFile: biomvRCNS_1.0.1.tgz
PackageFileSize: 502.7 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=biomvRCNS.buildbin-libdir biomvRCNS_1.0.1.tar.gz'
>>>>>>> 

* installing *source* package 'biomvRCNS' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c biomvRCNS.c -o biomvRCNS.o
biomvRCNS.c:185:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        den  = (double *)malloc(sizeof(double)*J);
                                              ˜^
biomvRCNS.c:186:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        num  = (double *)malloc(sizeof(double)*J*J); 
                                              ˜^
biomvRCNS.c:186:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        num  = (double *)malloc(sizeof(double)*J*J); 
                                                ˜^
3 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o biomvRCNS.so biomvRCNS.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/biomvRCNS.buildbin-libdir/biomvRCNS/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'biomvRCNS'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (biomvRCNS)


>>>>>>> 
>>>>>>> FIXING LINKS FOR biomvRCNS.buildbin-libdir/biomvRCNS/libs//biomvRCNS.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "biomvRCNS.buildbin-libdir/biomvRCNS/libs//biomvRCNS.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "biomvRCNS.buildbin-libdir/biomvRCNS/libs//biomvRCNS.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "biomvRCNS.buildbin-libdir/biomvRCNS/libs//biomvRCNS.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "biomvRCNS.buildbin-libdir/biomvRCNS/libs//biomvRCNS.so"