adSplit 1.30.0
Claudio Lottaz
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/adSplit | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=adSplit.buildbin-libdir adSplit_1.30.0.tar.gz'
>>>>>>>
* installing *source* package 'adSplit' ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c adSplit.cpp -o adSplit.o
adSplit.cpp:118:45: warning: implicit conversion loses integer precision: 'int' to 'char' [-Wconversion]
for (int i=0; i<nrobj; i++) elements[i] = s[i];
˜ ^˜˜˜
adSplit.cpp:137:17: warning: implicit conversion loses integer precision: 'int' to 'char' [-Wconversion]
elements[i] = cl;
˜ ^˜
adSplit.cpp:141:45: warning: implicit conversion loses integer precision: 'int' to 'char' [-Wconversion]
for (int i=0; i<nrobj; i++) elements[i] = s[i];
˜ ^˜˜˜
adSplit.cpp:256:28: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings]
throw Tomato(__LINE__, "tscore: internal error, shame on the programmer");
^
adSplit.cpp:271:14: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort(twi, nrow, sizeof(doublewithindex), compare_descending);
˜˜˜˜˜ ^˜˜˜
adSplit.cpp:403:14: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort(swi, nsplit, sizeof(doublewithindex), compare_descending);
˜˜˜˜˜ ^˜˜˜˜˜
adSplit.cpp:469:30: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings]
throw Tomato(__LINE__, "isis() called with unknown function");
^
7 warnings generated.
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o adSplit.so adSplit.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/adSplit.buildbin-libdir/adSplit/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (adSplit)
>>>>>>>
>>>>>>> FIXING LINKS FOR adSplit.buildbin-libdir/adSplit/libs//adSplit.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "adSplit.buildbin-libdir/adSplit/libs//adSplit.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "adSplit.buildbin-libdir/adSplit/libs//adSplit.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "adSplit.buildbin-libdir/adSplit/libs//adSplit.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "adSplit.buildbin-libdir/adSplit/libs//adSplit.so"