Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R [S] T  U  V  W  X  Y  Z 

Package 600/671HostnameOS / ArchBUILDCHECKBUILD BIN
SLGI 1.20.0
Nolwenn Le Meur
Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/SLGI
Last Changed Rev: 75263 / Revision: 76155
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ OK ] OK 

Summary

Package: SLGI
Version: 1.20.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch SLGI_1.20.0.tar.gz
StartedAt: 2013-05-01 11:00:20 -0700 (Wed, 01 May 2013)
EndedAt: 2013-05-01 11:09:53 -0700 (Wed, 01 May 2013)
EllapsedTime: 573.3 seconds
RetCode: 0
Status:  OK 
CheckDir: SLGI.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/SLGI.Rcheck'
* using R version 3.0.0 Patched (2013-04-08 r62531)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'SLGI/DESCRIPTION' ... OK
* this is package 'SLGI' version '1.20.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'SLGI' can be installed ... [20s/22s] OK
* checking installed package size ... NOTE
  installed size is 15.9Mb
  sub-directories of 1Mb or more:
    data      4.2Mb
    extdata  11.3Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [340s/346s] OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
iSummary        45.242  4.408  51.046
siResult-class  36.296 13.317  50.019
plot            31.324 14.617  47.476
compare         31.420 13.235  45.022
modelSLGI       29.329 14.976  44.697
topInteraction  19.820  5.346  25.426
normInteraction 13.691  6.901  20.769
twoWayTable     18.765  0.389  19.765
AtongFnDomain    9.957  0.309  10.399
sharedBy         4.992  0.252   5.282
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/SLGI.Rcheck/00check.log'
for details.

SLGI.Rcheck/00install.out:

* installing *source* package 'SLGI' ...
** R
** data
** inst
** preparing package for lazy loading
No methods found in "BiocGenerics" for requests: plot
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
No methods found in "BiocGenerics" for requests: plot
* DONE (SLGI)

SLGI.Rcheck/SLGI-Ex.timings:

nameusersystemelapsed
Atong0.0240.0110.035
AtongFnDomain 9.957 0.30910.399
AtongPair0.0950.0400.135
SDL0.0240.0210.046
SGA0.0120.0120.024
SGD.SL0.1980.0300.230
TFmat0.1870.0370.226
byComplex0.8470.0950.970
comemberIn1.9060.1422.090
compare31.42013.23545.022
congruence0.0330.0080.045
createSquareMatrix0.6300.0840.716
domainDist4.2540.1754.551
essglist0.2380.0280.270
getInteraction0.5220.0350.563
getSharedDomains0.1750.0150.252
getSharedInteraction0.0060.0050.011
getTestedPairs0.0190.0100.028
getUniquePairs0.0320.0090.042
gi20050.0740.0170.090
gi20070.1820.0290.213
gi2Interactome0.0150.0130.029
hyperG0.0120.0070.019
iSummary45.242 4.40851.046
modelSLGI29.32914.97644.697
normInteraction13.691 6.90120.769
plot31.32414.61747.476
seqMatcherAlign0.0440.0120.059
sharedBy4.9920.2525.282
sharedInt0.9660.0381.009
siResult-class36.29613.31750.019
test2Interact0.0460.0190.066
topInteraction19.820 5.34625.426
twoWayTable18.765 0.38919.765
withinComplex1.7200.2572.025