MinimumDistance 1.3.3
Moiz Bootwalla
| Snapshot Date: 2013-01-15 17:01:14 -0800 (Tue, 15 Jan 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MinimumDistance | | Last Changed Rev: 72298 / Revision: 72575 | | Last Changed Date: 2013-01-04 13:18:09 -0800 (Fri, 04 Jan 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | ERROR | skipped | |
| lamb2 | Linux (openSUSE 11.4) / x86_64 | [ ERROR ] | skipped | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | ERROR | skipped | skipped |
| petty | Mac OS X Leopard (10.5.8) / i386 | ERROR | skipped | skipped |
* checking for file ‘MinimumDistance/DESCRIPTION’ ... OK
* preparing ‘MinimumDistance’:
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall,
clusterEvalQ, clusterExport, clusterMap, parApply,
parCapply, parLapply, parLapplyLB, parRapply,
parSapply, parSapplyLB
The following object is masked from ‘package:stats’:
xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated,
as.data.frame, cbind, colnames, duplicated, eval,
get, intersect, lapply, mapply, match, mget, order,
paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
rep.int, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unlist
Loading package bit 1.1-9
package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
creators: bit bitwhich
coercion: as.logical as.integer as.bit as.bitwhich which
operator: ! & | xor != ==
querying: print length any all min max range sum summary
bit access: length<- [ [<- [[ [[<-
for more help type ?bit
Loading package ff2.2-10
- getOption("fftempdir")=="/tmp/Rtmp20UYBs"
- getOption("ffextension")=="ff"
- getOption("ffdrop")==TRUE
- getOption("fffinonexit")==TRUE
- getOption("ffpagesize")==65536
- getOption("ffcaching")=="mmnoflush" -- consider "ffeachflush" if your system stalls on large writes
- getOption("ffbatchbytes")==16777216 -- consider a different value for tuning your system
- getOption("ffmaxbytes")==536870912 -- consider a different value for tuning your system
Welcome to oligoClasses version 1.21.6
Loading required package: IRanges
Welcome to MinimumDistance version 1.3.3
Attaching package: ‘MinimumDistance’
The following object is masked from ‘package:oligoClasses’:
baf<-, lrr<-
The following object is masked from ‘package:methods’:
allNames
Welcome to Bioconductor
Vignettes contain introductory material; view with
‘browseVignettes()’. To cite Bioconductor, see
‘citation("Biobase")’, and for packages
‘citation("pkgname")’.
Warning in readChar(con, 5L, useBytes = TRUE) :
cannot open compressed file ‘/loc/home/biocbuild/bbs-2.12-bioc/R/library/oligoClasses/extdata/seqlengths_.rda’, probable reason ‘No such file or directory’
Error: processing vignette ‘MinimumDistance.Rnw’ failed with diagnostics:
chunk 7 (label = callDenovoSegments)
Error in readChar(con, 5L, useBytes = TRUE) : cannot open the connection
Execution halted