Back to the "Multiple platform build/check report" A  B  C  D  E  F  G [H] I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 312/671HostnameOS / ArchBUILDCHECKBUILD BIN
HEM 1.32.0
HyungJun Cho
Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/HEM
Last Changed Rev: 75263 / Revision: 76155
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ OK ] OK 

Summary

Package: HEM
Version: 1.32.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch HEM_1.32.0.tar.gz
StartedAt: 2013-05-01 06:49:05 -0700 (Wed, 01 May 2013)
EndedAt: 2013-05-01 06:49:59 -0700 (Wed, 01 May 2013)
EllapsedTime: 53.9 seconds
RetCode: 0
Status:  OK 
CheckDir: HEM.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/HEM.Rcheck'
* using R version 3.0.0 Patched (2013-04-08 r62531)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'HEM/DESCRIPTION' ... OK
* this is package 'HEM' version '1.32.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'HEM' can be installed ... [4s/5s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
NB: .First.lib is obsolete and will not be used in R >= 3.0.0
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
File '/Users/biocbuild/bbs-2.12-bioc/meat/HEM.Rcheck/HEM/libs/HEM.so':
  Found '_printf', possibly from 'printf' (C)
    Object: 'hem.o'

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking installed files from 'inst/doc' ... OK
* checking examples ... [2s/2s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/HEM.Rcheck/00check.log'
for details.

HEM.Rcheck/00install.out:

* installing *source* package 'HEM' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c hem.c -o hem.o
hem.c:106:26: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        group = (int *) calloc(ngroup, sizeof(int));        
                        ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:115:25: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        rep = (int **) calloc(ngroup, sizeof(int));
                       ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:116:61: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        for(j = 0; j < ngroup; j++) rep[j] = (int *) calloc(group[j], sizeof(int)); 
                                                     ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
hem.c:118:25: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        nn = (int ***) calloc(ngene, sizeof(int));
                       ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:119:60: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        for(i = 0; i < ngene; i++) nn[i] = (int **) calloc(ngroup, sizeof(int)); 
                                                    ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:124:43: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                nn[i][j] = (int *) calloc(group[j], sizeof(int));
                                   ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
hem.c:140:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        obs = (double ****) calloc(ngene, sizeof(double));
                            ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:141:26: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        mis = (int ****) calloc(ngene, sizeof(int));
                         ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:142:27: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        gene = (double *) calloc(ngene, sizeof(double));
                          ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:143:27: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        cell = (double *) calloc(ngroup, sizeof(double));
                          ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:144:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        expr = (double ***) calloc(ngene, sizeof(double));
                            ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:145:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        inter = (double **) calloc(ngene, sizeof(double));
                            ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:146:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        sigma2_bio = (double **) calloc(ngene, sizeof(double));
                                 ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:147:37: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        sigma2_array = (double ***) calloc(ngene, sizeof(double));
                                    ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:151:42: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            obs[i] = (double ***) calloc(ngroup, sizeof(double)); 
                                  ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:152:39: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            mis[i] = (int ***) calloc(ngroup, sizeof(int)); 
                               ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:153:42: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            expr[i] = (double **) calloc(ngroup, sizeof(double)); 
                                  ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:154:42: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            inter[i] = (double *) calloc(ngroup, sizeof(double)); 
                                  ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:155:47: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            sigma2_bio[i] = (double *) calloc(ngroup, sizeof(double)); 
                                       ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:156:50: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            sigma2_array[i] = (double **) calloc(ngroup, sizeof(double)); 
                                          ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:164:48: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                obs[i][j] = (double **) calloc(group[j], sizeof(double));
                                        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
hem.c:165:45: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                mis[i][j] = (int **) calloc(group[j], sizeof(int));
                                     ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
hem.c:166:48: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                expr[i][j] = (double *) calloc(group[j], sizeof(double));
                                        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
hem.c:167:56: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                sigma2_array[i][j] = (double *) calloc(group[j], sizeof(double)); 
                                                ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
hem.c:177:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                    obs[i][j][k] = (double *) calloc(nn[i][j][k], sizeof(double));
                                              ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
hem.c:178:37: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                    mis[i][j][k] = (int *) calloc(nn[i][j][k], sizeof(int));
                                           ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
hem.c:222:26: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        group = (int *) calloc(ngroup, sizeof(int));        
                        ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:232:25: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        rep = (int **) calloc(ngroup, sizeof(int));
                       ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:233:61: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        for(j = 0; j < ngroup; j++) rep[j] = (int *) calloc(group[j], sizeof(int)); 
                                                     ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
hem.c:235:25: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        nn = (int ***) calloc(ngene, sizeof(int));
                       ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:236:60: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        for(i = 0; i < ngene; i++) nn[i] = (int **) calloc(ngroup, sizeof(int)); 
                                                    ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:241:43: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                nn[i][j] = (int *) calloc(group[j], sizeof(int));
                                   ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
hem.c:256:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        obs = (double ****) calloc(ngene, sizeof(double));
                            ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:257:26: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        mis = (int ****) calloc(ngene, sizeof(int));
                         ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:258:27: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        gene = (double *) calloc(ngene, sizeof(double));
                          ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:259:27: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        cell = (double *) calloc(ngroup, sizeof(double));
                          ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:260:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        expr = (double ***) calloc(ngene, sizeof(double));
                            ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:261:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        inter = (double **) calloc(ngene, sizeof(double));
                            ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:262:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        sigma2_bio = (double **) calloc(ngene, sizeof(double));
                                 ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:266:42: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            obs[i] = (double ***) calloc(ngroup, sizeof(double)); 
                                  ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:267:39: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            mis[i] = (int ***) calloc(ngroup, sizeof(int)); 
                               ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:268:42: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            expr[i] = (double **) calloc(ngroup, sizeof(double)); 
                                  ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:269:42: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            inter[i] = (double *) calloc(ngroup, sizeof(double)); 
                                  ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:270:47: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            sigma2_bio[i] = (double *) calloc(ngroup, sizeof(double)); 
                                       ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:278:48: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                obs[i][j] = (double **) calloc(group[j], sizeof(double));
                                        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
hem.c:279:45: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                mis[i][j] = (int **) calloc(group[j], sizeof(int));
                                     ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
hem.c:280:48: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                expr[i][j] = (double *) calloc(group[j], sizeof(double));
                                        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
hem.c:290:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                    obs[i][j][k] = (double *) calloc(nn[i][j][k], sizeof(double));
                                              ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
hem.c:291:37: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                    mis[i][j][k] = (int *) calloc(nn[i][j][k], sizeof(int));
                                           ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
hem.c:335:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        boot_array = (double ***) calloc(ngroup, sizeof(double));
                                  ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:336:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        quantile_array = (double **) calloc(ngroup, sizeof(double));
                                     ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:343:48: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            boot_array[j] = (double **) calloc(Brep, sizeof(double));
                                        ˜˜˜˜˜˜ ^˜˜˜
hem.c:344:44: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            quantile_array[j] = (double *) calloc(nquantile, sizeof(double));
                                           ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
hem.c:351:54: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                boot_array[j][k] = (double *) calloc(nquantile, sizeof(double));
                                              ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
hem.c:382:33: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        lpe_array = (double **) calloc(nquantile, sizeof(double));
                                ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
hem.c:383:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        quantile_array = (double **) calloc(nquantile, sizeof(double));
                                     ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
hem.c:387:46: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            lpe_array[i] = (double *) calloc(ngroup, sizeof(double));
                                      ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:388:51: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            quantile_array[i] = (double *) calloc(ngroup, sizeof(double));
                                           ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:413:31: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        lpe_bio = (double **) calloc(ngene, sizeof(double));
                              ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:416:44: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            lpe_bio[i] = (double *) calloc(ngroup, sizeof(double));
                                    ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:447:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        boot_array = (double ***) calloc(ngroup, sizeof(double));
                                  ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:448:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        quantile_array = (double **) calloc(ngroup, sizeof(double));
                                     ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:455:48: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            boot_array[j] = (double **) calloc(Brep, sizeof(double));
                                        ˜˜˜˜˜˜ ^˜˜˜
hem.c:456:44: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            quantile_array[j] = (double *) calloc(nquantile, sizeof(double));
                                           ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
hem.c:463:54: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                boot_array[j][k] = (double *) calloc(nquantile, sizeof(double));
                                              ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
hem.c:493:31: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        lpe_bio = (double **) calloc(ngene, sizeof(double));
                              ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:496:44: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            lpe_bio[i] = (double *) calloc(ngroup, sizeof(double));
                                    ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:608:54: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
                                 n1 = RandomUniform()*(Brep-1);
                                    ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
hem.c:672:54: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
                                 n1 = RandomUniform()*(Brep-1);
                                    ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
hem.c:999:54: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
                                 n1 = RandomUniform()*(Brep-1);
                                    ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
hem.c:1096:54: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
                                 n1 = RandomUniform()*(Brep-1);
                                    ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
hem.c:1166:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        mean_gene = (double *) calloc(ngene, sizeof(double));
                               ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:1167:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        mean_cell = (double *) calloc(ngroup, sizeof(double));
                               ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:1168:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        mean_inter = (double **) calloc(ngene, sizeof(double));
                                 ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:1169:39: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        mean_sigma2_bio = (double **) calloc(ngene, sizeof(double));
                                      ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:1170:42: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        mean_sigma2_array = (double ***) calloc(ngene, sizeof(double));
                                         ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:1171:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        mean_expr = (double ***) calloc(ngene, sizeof(double));
                                 ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:1172:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        expr_est = (double **) calloc(ngene, sizeof(double));
                               ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:1173:37: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        mean_expr_est = (double **) calloc(ngene, sizeof(double));
                                    ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:1177:47: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            mean_inter[i] = (double *) calloc(ngroup, sizeof(double)); 
                                       ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:1178:52: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            mean_sigma2_bio[i] = (double *) calloc(ngroup, sizeof(double)); 
                                            ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:1179:55: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            mean_sigma2_array[i] = (double **) calloc(ngroup, sizeof(double)); 
                                               ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:1180:47: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            mean_expr[i] = (double **) calloc(ngroup, sizeof(double)); 
                                       ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:1181:45: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            expr_est[i] = (double *) calloc(ngroup, sizeof(double)); 
                                     ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:1182:50: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            mean_expr_est[i] = (double *) calloc(ngroup, sizeof(double)); 
                                          ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:1188:52: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
               mean_expr[i][j] = (double *) calloc(group[j], sizeof(double));
                                            ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
hem.c:1189:60: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
               mean_sigma2_array[i][j] = (double *) calloc(group[j], sizeof(double)); 
                                                    ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
hem.c:1422:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        mean_gene = (double *) calloc(ngene, sizeof(double));
                               ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:1423:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        mean_cell = (double *) calloc(ngroup, sizeof(double));
                               ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:1424:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        mean_inter = (double **) calloc(ngene, sizeof(double));
                                 ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:1425:39: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        mean_sigma2_bio = (double **) calloc(ngene, sizeof(double));
                                      ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:1426:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        expr_est = (double **) calloc(ngene, sizeof(double));
                               ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:1427:37: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        mean_expr_est = (double **) calloc(ngene, sizeof(double));
                                    ˜˜˜˜˜˜ ^˜˜˜˜
hem.c:1431:47: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            mean_inter[i] = (double *) calloc(ngroup, sizeof(double)); 
                                       ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:1432:52: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            mean_sigma2_bio[i] = (double *) calloc(ngroup, sizeof(double)); 
                                            ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:1433:45: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            expr_est[i] = (double *) calloc(ngroup, sizeof(double)); 
                                     ˜˜˜˜˜˜ ^˜˜˜˜˜
hem.c:1434:50: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            mean_expr_est[i] = (double *) calloc(ngroup, sizeof(double)); 
                                          ˜˜˜˜˜˜ ^˜˜˜˜˜
97 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o HEM.so hem.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/HEM.Rcheck/HEM/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: ignoring .First.lib() for package 'HEM'
* DONE (HEM)

HEM.Rcheck/HEM-Ex.timings:

nameusersystemelapsed
hem0.2790.0100.289
hem.eb.prior0.2710.0120.293
hem.fdr0.1570.0040.163
hem.preproc0.0460.0020.048