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Package 176/671HostnameOS / ArchBUILDCHECKBUILD BIN
DESeq 1.12.0
Simon Anders
Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/DESeq
Last Changed Rev: 75263 / Revision: 76155
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ]

Summary

Package: DESeq
Version: 1.12.0
Command: rm -rf DESeq.buildbin-libdir && mkdir DESeq.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DESeq_1.12.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R DESeq.buildbin-libdir
StartedAt: 2013-05-01 12:18:41 -0700 (Wed, 01 May 2013)
EndedAt: 2013-05-01 12:19:00 -0700 (Wed, 01 May 2013)
EllapsedTime: 18.9 seconds
RetCode: 0
Status:  OK 
PackageFile: DESeq_1.12.0.tgz
PackageFileSize: 2.27 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=DESeq.buildbin-libdir DESeq_1.12.0.tar.gz'
>>>>>>> 

* installing *source* package 'DESeq' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c pval.c -o pval.o
pval.c:64:51: warning: implicit conversion turns floating-point number into integer: 'double' to 'long' [-Wconversion]
            step = MAX( step + 1, (long int) step * 1.5 );
                 ˜                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
pval.c:7:35: note: expanded from macro 'MAX'
#define MAX( a, b ) ( a > b ? a : b )
                                  ^
pval.c:86:51: warning: implicit conversion turns floating-point number into integer: 'double' to 'long' [-Wconversion]
            step = MAX( step + 1, (long int) step * 1.5 );
                 ˜                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
pval.c:7:35: note: expanded from macro 'MAX'
#define MAX( a, b ) ( a > b ? a : b )
                                  ^
pval.c:26:11: warning: unused variable 'esttotalperlength' [-Wunused-variable]
   double esttotalperlength = total/2;
          ^
pval.c:100:50: warning: implicit conversion turns floating-point number into integer: 'double' to 'long' [-Wconversion]
   long int kexp = INTEGER(kS)[0] * REAL(muA)[0] / ( REAL(muA)[0] + REAL(muB)[0] );   
            ˜˜˜˜   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
4 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o DESeq.so pval.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/DESeq.buildbin-libdir/DESeq/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DESeq)


>>>>>>> 
>>>>>>> FIXING LINKS FOR DESeq.buildbin-libdir/DESeq/libs//DESeq.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "DESeq.buildbin-libdir/DESeq/libs//DESeq.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "DESeq.buildbin-libdir/DESeq/libs//DESeq.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "DESeq.buildbin-libdir/DESeq/libs//DESeq.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "DESeq.buildbin-libdir/DESeq/libs//DESeq.so"