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Package 166/671HostnameOS / ArchBUILDCHECKBUILD BIN
DBChIP 1.4.0
Kun Liang
Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/DBChIP
Last Changed Rev: 75263 / Revision: 76155
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ OK ] OK 

Summary

Package: DBChIP
Version: 1.4.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch DBChIP_1.4.0.tar.gz
StartedAt: 2013-05-01 04:19:58 -0700 (Wed, 01 May 2013)
EndedAt: 2013-05-01 04:23:33 -0700 (Wed, 01 May 2013)
EllapsedTime: 214.9 seconds
RetCode: 0
Status:  OK 
CheckDir: DBChIP.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/DBChIP.Rcheck'
* using R version 3.0.0 Patched (2013-04-08 r62531)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'DBChIP/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DBChIP' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'DBChIP' can be installed ... [18s/18s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
test.diff.binding.edgeR: possible error in estimateTagwiseDisp(d,
  prior.n = prior.n, verbose = FALSE): unused argument (prior.n =
  prior.n)
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [23s/24s] OK
Examples with CPU or elapsed time > 5s
        user system elapsed
DBChIP 7.503  0.649   8.858
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'runTests.R' [11s/12s]
 [12s/12s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/DBChIP.Rcheck/00check.log'
for details.

DBChIP.Rcheck/00install.out:

* installing *source* package 'DBChIP' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DBChIP)

DBChIP.Rcheck/DBChIP-Ex.timings:

nameusersystemelapsed
DBChIP-package3.2990.1373.522
DBChIP7.5030.6498.858
binding.site.list0.3130.0480.364
chip.data.list0.3090.0440.362
conds0.3110.0380.350
input.data.list0.5450.0460.597
load.data0.9600.1241.105
read.binding.site.list0.3280.0400.376