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Package 165/671HostnameOS / ArchBUILDCHECKBUILD BIN
DAVIDQuery 1.20.0
Roger Day
Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/DAVIDQuery
Last Changed Rev: 75263 / Revision: 76155
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ OK ] OK 

Summary

Package: DAVIDQuery
Version: 1.20.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch DAVIDQuery_1.20.0.tar.gz
StartedAt: 2013-05-01 04:19:12 -0700 (Wed, 01 May 2013)
EndedAt: 2013-05-01 04:19:56 -0700 (Wed, 01 May 2013)
EllapsedTime: 43.8 seconds
RetCode: 0
Status:  OK 
CheckDir: DAVIDQuery.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/DAVIDQuery.Rcheck'
* using R version 3.0.0 Patched (2013-04-08 r62531)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'DAVIDQuery/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DAVIDQuery' version '1.20.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'DAVIDQuery' can be installed ... [3s/3s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
NB: .First.lib is obsolete and will not be used in R >= 3.0.0
File 'DAVIDQuery/R/zzz.R':
  .onAttach calls:
    cat("This is DAVIDQuery Version ", DQVersion, " ", DQdate, "\n")

Package startup functions should use 'packageStartupMessage' to
  generate messages.
See section 'Good practice' in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... NOTE
The following files should probably not be installed:
  'DAVIDQuery.lyx'

Consider the use of a .Rinstignore file: see 'Writing R Extensions',
or move the vignette sources from 'inst/doc' to 'vignettes'.
* checking examples ... [2s/8s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/DAVIDQuery.Rcheck/00check.log'
for details.

DAVIDQuery.Rcheck/00install.out:

* installing *source* package 'DAVIDQuery' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
This is DAVIDQuery Version  1.20.0   2010-06-10 
* DONE (DAVIDQuery)

DAVIDQuery.Rcheck/DAVIDQuery-Ex.timings:

nameusersystemelapsed
DAVIDQuery0.1550.0141.601
bracketedStrings0.0120.0010.013
convertIDList0.0090.0010.011
findInBrackets0.0080.0010.009
getAffyChipTypes0.0100.0000.011
getAffyProbesetList0.4290.0383.142
getAnnotationChoices0.0100.0010.012
getIdConversionChoices0.0110.0010.012
requestIDConversion0.0120.0010.014
testGene2Gene0.0630.0081.806
uploadIDList0.0170.0010.020