BufferedMatrixMethods 1.24.0
B. M. Bolstad
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/BufferedMatrixMethods | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BufferedMatrixMethods.buildbin-libdir BufferedMatrixMethods_1.24.0.tar.gz'
>>>>>>>
* installing *source* package 'BufferedMatrixMethods' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/BufferedMatrix/include" -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c init_package.c -o init_package.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/BufferedMatrix/include" -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c:344:7: warning: unused variable 'i' [-Wunused-variable]
int i,j;
^
preprocess_bm.c:378:7: warning: unused variable 'current_mode' [-Wunused-variable]
int current_mode;
^
preprocess_bm.c:542:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort(datvec,rows,sizeof(double),(int(*)(const void*, const void*))sort_double);
˜˜˜˜˜ ^˜˜˜
preprocess_bm.c:563:20: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort(dimat[0],rows,sizeof(dataitem),sort_fn);
˜˜˜˜˜ ^˜˜˜
preprocess_bm.c:593:7: warning: unused variable 'current_mode' [-Wunused-variable]
int current_mode;
^
preprocess_bm.c:640:16: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort(buffer,length,sizeof(double), (int(*)(const void*, const void*))sort_double);
˜˜˜˜˜ ^˜˜˜˜˜
preprocess_bm.c:946:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
cur_rows = Realloc(cur_rows, max_nrows, int);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
^
preprocess_bm.c:958:14: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
size = strlen(first);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
preprocess_bm.c:971:10: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
size = strlen(first);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
preprocess_bm.c:1102:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort(datvec,rows,sizeof(double),(int(*)(const void*, const void*))sort_double);
˜˜˜˜˜ ^˜˜˜
preprocess_bm.c:1123:20: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort(dimat[0],rows,sizeof(dataitem),sort_fn);
˜˜˜˜˜ ^˜˜˜
preprocess_bm.c:1151:7: warning: unused variable 'current_mode' [-Wunused-variable]
int current_mode;
^
preprocess_bm.c:453:12: warning: unused function 'min' [-Wunused-function]
static int min(int x1,int x2){
^
13 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o BufferedMatrixMethods.so init_package.o preprocess_bm.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Warning: ignoring .First.lib() for package 'BufferedMatrixMethods'
* DONE (BufferedMatrixMethods)
>>>>>>>
>>>>>>> FIXING LINKS FOR BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs//BufferedMatrixMethods.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs//BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs//BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs//BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs//BufferedMatrixMethods.so"