BufferedMatrix 1.24.0
Benjamin Milo Bolstad
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/BufferedMatrix | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BufferedMatrix.buildbin-libdir BufferedMatrix_1.24.0.tar.gz'
>>>>>>>
* installing *source* package 'BufferedMatrix' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c RBufferedMatrix.c -o RBufferedMatrix.o
RBufferedMatrix.c:135:22: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
Matrix = dbm_alloc(max_rows,max_cols,prefix,directory);
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
RBufferedMatrix.c:135:31: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
Matrix = dbm_alloc(max_rows,max_cols,prefix,directory);
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
2 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c doubleBufferedMatrix.c -o doubleBufferedMatrix.o
doubleBufferedMatrix.c:402:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
fseek(myfile,Matrix->first_rowdata*sizeof(double),SEEK_SET);
˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
doubleBufferedMatrix.c:403:77: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
blocks_written = fwrite(&(Matrix->rowdata)[j][0],sizeof(double),Matrix->max_rows,myfile);
˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
doubleBufferedMatrix.c:403:22: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
blocks_written = fwrite(&(Matrix->rowdata)[j][0],sizeof(double),Matrix->max_rows,myfile);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
doubleBufferedMatrix.c:440:69: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
blocks_written = fwrite(Matrix->coldata[0],sizeof(double),Matrix->rows,myfile);
˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜^˜˜˜
doubleBufferedMatrix.c:440:20: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
blocks_written = fwrite(Matrix->coldata[0],sizeof(double),Matrix->rows,myfile);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
doubleBufferedMatrix.c:491:71: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
blocks_written = fwrite(Matrix->coldata[k],sizeof(double),Matrix->rows,myfile);
˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜^˜˜˜
doubleBufferedMatrix.c:491:22: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
blocks_written = fwrite(Matrix->coldata[k],sizeof(double),Matrix->rows,myfile);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
doubleBufferedMatrix.c:551:74: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
blocks_read = fread(Matrix->coldata[lastcol -1],sizeof(double),Matrix->rows,myfile);
˜˜˜˜˜ ˜˜˜˜˜˜˜˜^˜˜˜
doubleBufferedMatrix.c:551:17: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
blocks_read = fread(Matrix->coldata[lastcol -1],sizeof(double),Matrix->rows,myfile);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
doubleBufferedMatrix.c:662:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
fseek(myfile,Matrix->first_rowdata*sizeof(double),SEEK_SET);
˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
doubleBufferedMatrix.c:663:73: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
blocks_read = fread(&(Matrix->rowdata)[j][0],sizeof(double),Matrix->max_rows,myfile);
˜˜˜˜˜ ˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
doubleBufferedMatrix.c:663:19: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
blocks_read = fread(&(Matrix->rowdata)[j][0],sizeof(double),Matrix->max_rows,myfile);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
doubleBufferedMatrix.c:720:69: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
blocks_read = fread(Matrix->coldata[where],sizeof(double),Matrix->rows,myfile);
˜˜˜˜˜ ˜˜˜˜˜˜˜˜^˜˜˜
doubleBufferedMatrix.c:720:17: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
blocks_read = fread(Matrix->coldata[where],sizeof(double),Matrix->rows,myfile);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
doubleBufferedMatrix.c:1049:72: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(&Matrix->coldata[Matrix->cols][0],0,sizeof(double)* Matrix->rows);
˜ ˜˜˜˜˜˜˜˜^˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
doubleBufferedMatrix.c:1049:72: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(&Matrix->coldata[Matrix->cols][0],0,sizeof(double)* Matrix->rows);
˜ ˜˜˜˜˜˜˜˜^˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
doubleBufferedMatrix.c:1072:67: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(&temp_ptr[Matrix->cols][0],0,sizeof(double)* Matrix->max_rows);
˜ ˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
doubleBufferedMatrix.c:1072:67: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(&temp_ptr[Matrix->cols][0],0,sizeof(double)* Matrix->max_rows);
˜ ˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
doubleBufferedMatrix.c:1088:65: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
blocks_written = fwrite(&temp_col[0],sizeof(double),Matrix->rows,myfile);
˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜^˜˜˜
doubleBufferedMatrix.c:1107:78: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(&Matrix->coldata[Matrix->max_cols-1][0],0,sizeof(double)* Matrix->rows);
˜ ˜˜˜˜˜˜˜˜^˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
doubleBufferedMatrix.c:1107:78: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(&Matrix->coldata[Matrix->max_cols-1][0],0,sizeof(double)* Matrix->rows);
˜ ˜˜˜˜˜˜˜˜^˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
doubleBufferedMatrix.c:1128:67: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(&temp_ptr[Matrix->cols][0],0,sizeof(double)* Matrix->max_rows);
˜ ˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
doubleBufferedMatrix.c:1128:67: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(&temp_ptr[Matrix->cols][0],0,sizeof(double)* Matrix->max_rows);
˜ ˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
doubleBufferedMatrix.c:1172:83: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
blocks_written = fwrite(Matrix->coldata[which_col_num],sizeof(double), Matrix->rows, myfile);
˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜^˜˜˜
doubleBufferedMatrix.c:1088:22: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
blocks_written = fwrite(&temp_col[0],sizeof(double),Matrix->rows,myfile);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
doubleBufferedMatrix.c:1172:20: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
blocks_written = fwrite(Matrix->coldata[which_col_num],sizeof(double), Matrix->rows, myfile);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
doubleBufferedMatrix.c:1890:70: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memcpy(&value[j*Matrix->rows],&(Matrix->coldata[curcol][0]),Matrix->rows*sizeof(double));
˜˜˜˜˜˜˜˜^˜˜˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest)) \
^
doubleBufferedMatrix.c:1890:70: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memcpy(&value[j*Matrix->rows],&(Matrix->coldata[curcol][0]),Matrix->rows*sizeof(double));
˜˜˜˜˜˜˜˜^˜˜˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
: __inline_memcpy_chk (dest, src, len))
^
doubleBufferedMatrix.c:1895:83: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memcpy(&value[j*Matrix->rows],&(Matrix->coldata[Matrix->max_cols -1][0]),Matrix->rows*sizeof(double));
˜˜˜˜˜˜˜˜^˜˜˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest)) \
^
doubleBufferedMatrix.c:1895:83: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memcpy(&value[j*Matrix->rows],&(Matrix->coldata[Matrix->max_cols -1][0]),Matrix->rows*sizeof(double));
˜˜˜˜˜˜˜˜^˜˜˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
: __inline_memcpy_chk (dest, src, len))
^
doubleBufferedMatrix.c:2006:70: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memcpy(&(Matrix->coldata[curcol][0]),&value[j*Matrix->rows],Matrix->rows*sizeof(double));
˜˜˜˜˜˜˜˜^˜˜˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest)) \
^
doubleBufferedMatrix.c:2006:70: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memcpy(&(Matrix->coldata[curcol][0]),&value[j*Matrix->rows],Matrix->rows*sizeof(double));
˜˜˜˜˜˜˜˜^˜˜˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
: __inline_memcpy_chk (dest, src, len))
^
doubleBufferedMatrix.c:2011:83: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memcpy(&(Matrix->coldata[Matrix->max_cols -1][0]),&value[j*Matrix->rows],Matrix->rows*sizeof(double));
˜˜˜˜˜˜˜˜^˜˜˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest)) \
^
doubleBufferedMatrix.c:2011:83: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memcpy(&(Matrix->coldata[Matrix->max_cols -1][0]),&value[j*Matrix->rows],Matrix->rows*sizeof(double));
˜˜˜˜˜˜˜˜^˜˜˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
: __inline_memcpy_chk (dest, src, len))
^
doubleBufferedMatrix.c:2108:12: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
int len= strlen(Matrix->fileprefix);
˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
doubleBufferedMatrix.c:2122:13: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
int len = strlen(Matrix->filedirectory);
˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
doubleBufferedMatrix.c:2136:13: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
int len = strlen(Matrix->filenames[col]);
˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
doubleBufferedMatrix.c:2161:13: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
int len = strlen(newdirectory);
˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
doubleBufferedMatrix.c:3565:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
object_size+= Matrix->cols*sizeof(double *);
˜˜˜˜˜˜˜˜^˜˜˜˜
doubleBufferedMatrix.c:3566:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
object_size+= Matrix->cols*Matrix->rows*sizeof(double);
˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
doubleBufferedMatrix.c:3567:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
object_size+= Matrix->cols*sizeof(int);
˜˜˜˜˜˜˜˜^˜˜˜˜
doubleBufferedMatrix.c:3569:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
object_size+= Matrix->max_cols*sizeof(double *);
˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
doubleBufferedMatrix.c:3570:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
object_size+= Matrix->max_cols*Matrix->rows*sizeof(double);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
doubleBufferedMatrix.c:3571:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
object_size+= Matrix->max_cols*sizeof(int);
˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
doubleBufferedMatrix.c:3576:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
object_size+= Matrix->cols*sizeof(double *);
˜˜˜˜˜˜˜˜^˜˜˜˜
doubleBufferedMatrix.c:3578:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
object_size+= Matrix->rows*Matrix->max_rows*sizeof(double);
˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
doubleBufferedMatrix.c:3580:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
object_size+= Matrix->cols*Matrix->max_rows*sizeof(double);
˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
doubleBufferedMatrix.c:3589:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
object_size+= Matrix->cols*sizeof(char *);
˜˜˜˜˜˜˜˜^˜˜˜˜
doubleBufferedMatrix.c:3327:12: warning: unused function 'sort_double' [-Wunused-function]
static int sort_double(const double *a1,const double *a2){
^
49 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c doubleBufferedMatrix_C_tests.c -o doubleBufferedMatrix_C_tests.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c init_package.c -o init_package.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o BufferedMatrix.so RBufferedMatrix.o doubleBufferedMatrix.o doubleBufferedMatrix_C_tests.o init_package.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/BufferedMatrix.buildbin-libdir/BufferedMatrix/libs
** R
** inst
** preparing package for lazy loading
Creating a new generic function for 'rowMeans' in package 'BufferedMatrix'
Creating a new generic function for 'rowSums' in package 'BufferedMatrix'
Creating a new generic function for 'colMeans' in package 'BufferedMatrix'
Creating a new generic function for 'colSums' in package 'BufferedMatrix'
Creating a generic function for 'ncol' from package 'base' in package 'BufferedMatrix'
Creating a generic function for 'nrow' from package 'base' in package 'BufferedMatrix'
Creating a generic function for 'mean' from package 'base' in package 'BufferedMatrix'
Creating a generic function for 'as.matrix' from package 'base' in package 'BufferedMatrix'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: ignoring .First.lib() for package 'BufferedMatrix'
* DONE (BufferedMatrix)
>>>>>>>
>>>>>>> FIXING LINKS FOR BufferedMatrix.buildbin-libdir/BufferedMatrix/libs//BufferedMatrix.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "BufferedMatrix.buildbin-libdir/BufferedMatrix/libs//BufferedMatrix.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "BufferedMatrix.buildbin-libdir/BufferedMatrix/libs//BufferedMatrix.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "BufferedMatrix.buildbin-libdir/BufferedMatrix/libs//BufferedMatrix.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "BufferedMatrix.buildbin-libdir/BufferedMatrix/libs//BufferedMatrix.so"