Package: hapFabia

Version: 1.1.7

Command: rm -rf hapFabia.buildbin-libdir && mkdir hapFabia.buildbin-libdir && /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL --build --no-multiarch --library=hapFabia.buildbin-libdir hapFabia_1.1.7.tar.gz

StartedAt: 2013-03-24 11:47:34 -0700 (Sun, 24 Mar 2013)

EndedAt: 2013-03-24 11:47:49 -0700 (Sun, 24 Mar 2013)

EllapsedTime: 15.1 seconds

RetCode: 0

Status:  OK

PackageFile: hapFabia_1.1.7.tgz

PackageFileSize: 1.623 MiB

* installing *source* package 'hapFabia' ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c interfaceR.c -o interfaceR.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c split_sparse_matrixB.c -o split_sparse_matrixB.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c vcftoFABIAB.c -o vcftoFABIAB.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o hapFabia.so interfaceR.o split_sparse_matrixB.o vcftoFABIAB.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c ./commandLine/split_sparse_matrix.c -o ./commandLine/split_sparse_matrix.o -mtune=core2 -g -O2 
./commandLine/split_sparse_matrix.c: In function 'Rprintf':
./commandLine/split_sparse_matrix.c:9: warning: format not a string literal and no format arguments
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c split_sparse_matrixB.c -o ./commandLine/split_sparse_matrixB.o -mtune=core2 -g -O2 
llvm-gcc-4.2 -arch x86_64 -std=gnu99 ./commandLine/split_sparse_matrix.o ./commandLine/split_sparse_matrixB.o -o ./commandLine/split_sparse_matrix
mv ./commandLine/split_sparse_matrix ../inst/commandLine/
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c ./commandLine/vcftoFABIA.c -o ./commandLine/vcftoFABIA.o -mtune=core2 -g -O2 
./commandLine/vcftoFABIA.c: In function 'Rprintf':
./commandLine/vcftoFABIA.c:10: warning: format not a string literal and no format arguments
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c vcftoFABIAB.c -o ./commandLine/vcftoFABIAB.o -mtune=core2 -g -O2 
llvm-gcc-4.2 -arch x86_64 -std=gnu99 ./commandLine/vcftoFABIA.o ./commandLine/vcftoFABIAB.o -o ./commandLine/vcftoFABIA
mv ./commandLine/vcftoFABIA ../inst/commandLine/
installing to /Users/biocbuild/bbs-2.12-bioc/meat/hapFabia.buildbin-libdir/hapFabia/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'hapfabia.Rnw' 
** testing if installed package can be loaded
packaged installation of 'hapFabia' as 'hapFabia_1.1.7.tgz'
* DONE (hapFabia)