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Package 279/658HostnameOS / ArchBUILDCHECKBUILD BIN
globaltest 5.13.1
Jelle Goeman
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/globaltest
Last Changed Rev: 70706 / Revision: 74774
Last Changed Date: 2012-10-21 07:46:03 -0700 (Sun, 21 Oct 2012)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: globaltest
Version: 5.13.1
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings globaltest_5.13.1.tar.gz
StartedAt: 2013-03-25 02:00:58 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 02:04:32 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 213.9 seconds
RetCode: 0
Status:  OK 
CheckDir: globaltest.Rcheck
Warnings: 0

Command output

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/globaltest.Rcheck’
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘globaltest/DESCRIPTION’ ... OK
* this is package ‘globaltest’ version ‘5.13.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘globaltest’ can be installed ... [18s/19s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
p.adjust,gt.object: warning in grep(method, p.adjust.methods, ign = T):
  partial argument match of 'ign' to 'ignore.case'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [17s/17s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.12-bioc/meat/globaltest.Rcheck/00check.log’
for details.

globaltest.Rcheck/00install.out:

* installing *source* package ‘globaltest’ ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for ‘sort’ from package ‘base’ in package ‘globaltest’
Creating a generic function for ‘model.matrix’ from package ‘stats’ in package ‘globaltest’
Creating a generic function for ‘coefficients’ from package ‘stats’ in package ‘globaltest’
Creating a generic function for ‘fitted.values’ from package ‘stats’ in package ‘globaltest’
Creating a generic function for ‘residuals’ from package ‘stats’ in package ‘globaltest’
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘GlobalTest.Rnw’ 
** testing if installed package can be loaded
* DONE (globaltest)

globaltest.Rcheck/globaltest-Ex.timings:

nameusersystemelapsed
comparative3.1360.0203.161
diagnostics0.8240.0280.855
genesettesting0.0240.0000.023
goodnessoffit1.7520.0361.923
gt1.5040.0041.508
gt.object-class0.4530.0040.456
gtoptions0.0160.0000.016
mlogit0.0480.0000.051
multtest0.5360.0040.543