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Package 243/658HostnameOS / ArchBUILDCHECKBUILD BIN
gCMAPWeb 0.99.2
Thomas Sandmann
Snapshot Date: 2013-03-23 17:02:20 -0700 (Sat, 23 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gCMAPWeb
Last Changed Rev: 74589 / Revision: 74756
Last Changed Date: 2013-03-19 17:54:10 -0700 (Tue, 19 Mar 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 N O T   S U P P O R T E D
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ OK ] OK 

Summary

Package: gCMAPWeb
Version: 0.99.2
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch gCMAPWeb_0.99.2.tar.gz
StartedAt: 2013-03-24 05:21:40 -0700 (Sun, 24 Mar 2013)
EndedAt: 2013-03-24 05:29:07 -0700 (Sun, 24 Mar 2013)
EllapsedTime: 447.0 seconds
RetCode: 0
Status:  OK 
CheckDir: gCMAPWeb.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/gCMAPWeb.Rcheck'
* using R version 3.0.0 beta (2013-03-21 r62346)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'gCMAPWeb/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'gCMAPWeb' version '0.99.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'gCMAPWeb' can be installed ... [33s/34s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [20s/23s] OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'runTests.R' [85s/83s]
 [85s/83s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/gCMAPWeb.Rcheck/00check.log'
for details.

gCMAPWeb.Rcheck/00install.out:

* installing *source* package 'gCMAPWeb' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'gCMAPWeb.Rnw' 
   'referenceDatasets.Rnw' 
** testing if installed package can be loaded
* DONE (gCMAPWeb)

gCMAPWeb.Rcheck/gCMAPWeb-Ex.timings:

nameusersystemelapsed
exampleCMAP2.0890.0952.199
examplePost0.2020.0170.220
gCMAPWeb-package0.0600.0080.068
gCMAPWeb0.0240.0040.029
load_cmaps0.1470.0140.160
validate_config_file0.6970.2193.954