Package: flowPlots

Version: 1.7.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch flowPlots_1.7.0.tar.gz

StartedAt: 2013-03-25 02:26:33 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 02:27:42 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 69.1 seconds

RetCode: 0

Status:  OK

CheckDir: flowPlots.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/flowPlots.Rcheck'
* using R Under development (unstable) (2013-02-26 r62077)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'flowPlots/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowPlots' version '1.7.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'flowPlots' can be installed ... [2s/2s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [34s/35s] OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
StackedData-class 12.638  2.069  14.778
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'flowPlots' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'flowPlots.Rnw' 
** testing if installed package can be loaded
* DONE (flowPlots)

name	user	system	elapsed
GroupListBoxplot	0.171	0.026	0.199
StackedData-class	12.638	2.069	14.778
adultsNeonates	0.007	0.005	0.013
computeMarginalData-methods	2.828	0.495	3.334
computeMarkers-methods	0.008	0.007	0.016
computePFDData-methods	3.001	0.563	3.594
computePFDGroupStatsList	0.345	0.056	0.417
computePFDPartsData-methods	4.244	0.575	4.829
computeProfileData-methods	4.144	0.580	4.745
legendPFDStatsGroupNames	0.251	0.037	0.290
makeBarplotData	0.039	0.016	0.056
makeDataList	0.100	0.017	0.117
makeTernaryData	0.251	0.040	0.294
marginalDF	0.011	0.006	0.017
marginalData-methods	0.018	0.011	0.029
markerMatrix	0.008	0.006	0.015
markers-methods	0.018	0.013	0.032
pfdDF	0.011	0.007	0.017
pfdData-methods	0.018	0.012	0.029
pfdPartsData-methods	0.019	0.011	0.030
pfdPartsList	0.005	0.006	0.013
profileDF	0.006	0.005	0.011
profileData-methods	0.010	0.011	0.029
readStackedData-methods	0.073	0.013	0.087
stackedData-methods	0.097	0.029	0.128