Package: eisa

Version: 1.11.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data eisa

StartedAt: 2013-03-23 22:39:31 -0700 (Sat, 23 Mar 2013)

EndedAt: 2013-03-23 22:41:00 -0700 (Sat, 23 Mar 2013)

EllapsedTime: 88.8 seconds

RetCode: 1

Status:  ERROR

PackageFile: None

PackageFileSize: NA

* checking for file 'eisa/DESCRIPTION' ... OK
* preparing 'eisa':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ...sh: line 1: 52253 Abort trap              '/Library/Frameworks/R.framework/Resources/bin/Rscript' --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle=FALSE)" > '/tmp/RtmpF2uExO/xshellcb25419f0d85' 2>&1
 ERROR
Loading required package: MASS
Loading required package: grid
Loading required package: colorspace
Loading required package: lattice
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall,
    clusterEvalQ, clusterExport, clusterMap,
    parApply, parCapply, parLapply, parLapplyLB,
    parRapply, parSapply, parSapplyLB

The following object is masked from 'package:stats':

    xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce,
    anyDuplicated, as.data.frame, cbind, colnames,
    duplicated, eval, get, intersect, lapply, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rep.int, rownames, sapply,
    setdiff, sort, table, tapply, union, unique,
    unlist

Loading required package: isa2
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view
    with 'browseVignettes()'. To cite Bioconductor,
    see 'citation("Biobase")', and for packages
    'citation("pkgname")'.

Loading required package: AnnotationDbi

Attaching package: 'AnnotationDbi'

The following object is masked from 'package:MASS':

    select

Loading required package: Category
Loading required package: genefilter

Attaching package: 'genefilter'

The following object is masked from 'package:MASS':

    area

Loading required package: DBI

Loading required package: org.Hs.eg.db



KEGG.db contains mappings based on older data because
  the original resource was removed from the the
  public domain before the most recent update was
  produced. This package should now be considered
  deprecated and future versions of Bioconductor may
  not have it available.  One possible alternative to
  consider is to look at the reactome.db package

R(52253,0x7fff708abcc0) malloc: *** error for object 0x7fff5fbf13c8: pointer being freed was not allocated
*** set a breakpoint in malloc_error_break to debug