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Package 633/658HostnameOS / ArchBUILDCHECKBUILD BIN
TSSi 1.5.0
Julian Gehring
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/TSSi
Last Changed Rev: 70052 / Revision: 74774
Last Changed Date: 2012-10-01 15:43:56 -0700 (Mon, 01 Oct 2012)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  ERROR  skipped 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: TSSi
Version: 1.5.0
Command: rm -rf TSSi.buildbin-libdir && mkdir TSSi.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh TSSi_1.5.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R TSSi.buildbin-libdir
StartedAt: 2013-03-25 05:47:24 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 05:47:37 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 13.3 seconds
RetCode: 0
Status:  OK 
PackageFile: TSSi_1.5.0.tgz
PackageFileSize: 369.9 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=TSSi.buildbin-libdir TSSi_1.5.0.tar.gz'
>>>>>>> 

* installing *source* package 'TSSi' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c assess.c -o assess.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c init.c -o init.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o TSSi.so assess.o init.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/TSSi.buildbin-libdir/TSSi/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'start' from package 'stats' in package 'TSSi'
Creating a generic function for 'end' from package 'stats' in package 'TSSi'
Creating a new generic function for 'segments' in package 'TSSi'
Creating a generic function for 'plot' from package 'graphics' in package 'TSSi'
** help
*** installing help indices
** building package indices
** installing vignettes
   'TSSi.Rnw' using 'UTF-8' 
** testing if installed package can be loaded
* DONE (TSSi)


>>>>>>> 
>>>>>>> FIXING LINKS FOR TSSi.buildbin-libdir/TSSi/libs/i386/TSSi.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "TSSi.buildbin-libdir/TSSi/libs/i386/TSSi.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "TSSi.buildbin-libdir/TSSi/libs/i386/TSSi.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "TSSi.buildbin-libdir/TSSi/libs/i386/TSSi.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "TSSi.buildbin-libdir/TSSi/libs/i386/TSSi.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=TSSi.buildbin-libdir --libs-only TSSi_1.5.0.tar.gz'
>>>>>>> 

* installing *source* package 'TSSi' ...
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c assess.c -o assess.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c init.c -o init.o
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o TSSi.so assess.o init.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/TSSi.buildbin-libdir/TSSi/libs/x86_64
* DONE (TSSi)


>>>>>>> 
>>>>>>> FIXING LINKS FOR TSSi.buildbin-libdir/TSSi/libs/x86_64/TSSi.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "TSSi.buildbin-libdir/TSSi/libs/x86_64/TSSi.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "TSSi.buildbin-libdir/TSSi/libs/x86_64/TSSi.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "TSSi.buildbin-libdir/TSSi/libs/x86_64/TSSi.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "TSSi.buildbin-libdir/TSSi/libs/x86_64/TSSi.so"