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Package 608/658HostnameOS / ArchBUILDCHECKBUILD BIN
SRAdb 1.13.2
Jack Zhu
Snapshot Date: 2013-03-23 17:02:20 -0700 (Sat, 23 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/SRAdb
Last Changed Rev: 72870 / Revision: 74756
Last Changed Date: 2013-01-24 04:59:07 -0800 (Thu, 24 Jan 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ OK ] OK 

Summary

Package: SRAdb
Version: 1.13.2
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch SRAdb_1.13.2.tar.gz
StartedAt: 2013-03-24 10:35:19 -0700 (Sun, 24 Mar 2013)
EndedAt: 2013-03-24 10:36:40 -0700 (Sun, 24 Mar 2013)
EllapsedTime: 81.1 seconds
RetCode: 0
Status:  OK 
CheckDir: SRAdb.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/SRAdb.Rcheck'
* using R version 3.0.0 beta (2013-03-21 r62346)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'SRAdb/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SRAdb' version '1.13.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'SRAdb' can be installed ... [8s/8s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... NOTE
The following files look like leftovers:
  'SRAdb/SRAdb-package.Rd'
Please remove them from your package.
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [4s/4s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/SRAdb.Rcheck/00check.log'
for details.

SRAdb.Rcheck/00install.out:

* installing *source* package 'SRAdb' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'SRAdb.Rnw' 
** testing if installed package can be loaded
* DONE (SRAdb)

SRAdb.Rcheck/SRAdb-Ex.timings:

nameusersystemelapsed
IGVclear0.1200.0010.121
IGVcollapse0.0070.0000.007
IGVgenome0.0080.0000.008
IGVgoto0.0070.0010.009
IGVload0.0100.0010.012
IGVsession0.0190.0040.022
IGVsnapshot0.0080.0010.009
IGVsocket0.0080.0010.009
IGVsort0.0080.0010.009
SRAdb-package0.0520.0060.057
ascpR0.0110.0020.012
ascpSRA0.0110.0010.012
colDescriptions0.0080.0010.009
entityGraph0.0150.0020.017
getFASTQfile0.0150.0020.017
getFASTQinfo0.0100.0010.011
getSRA0.0190.0020.021
getSRAdbFile0.0060.0010.007
getSRAfile0.1300.0020.132
getSRAinfo0.0090.0020.010
listSRAfile0.0090.0010.010
sraConvert0.0110.0010.012
sraGraph0.0130.0020.015
startIGV0.0050.0010.006