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Package 350/658HostnameOS / ArchBUILDCHECKBUILD BIN
KCsmart 2.17.1
Jorma de Ronde
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/KCsmart
Last Changed Rev: 72096 / Revision: 74774
Last Changed Date: 2012-12-20 18:39:29 -0800 (Thu, 20 Dec 2012)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: KCsmart
Version: 2.17.1
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings KCsmart_2.17.1.tar.gz
StartedAt: 2013-03-25 02:39:46 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 02:43:42 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 235.5 seconds
RetCode: 0
Status:  OK 
CheckDir: KCsmart.Rcheck
Warnings: 0

Command output

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/KCsmart.Rcheck’
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KCsmart/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KCsmart’ version ‘2.17.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KCsmart’ can be installed ... [6s/7s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [156s/161s] OK
Examples with CPU or elapsed time > 5s
                       user system elapsed
KCsmart-package      47.579  0.592  49.644
getSigRegionsCompKC  24.905  0.132  25.097
calcSpmCollection    19.661  0.092  20.449
compareSpmCollection 18.457  0.152  19.402
plotScaleSpace       11.741  0.020  11.902
plot                  6.680  0.052   6.846
findSigLevelFdr       5.789  0.040   5.832
getSigSegments        5.057  0.016   5.384
write.table           4.984  0.016   5.014
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

KCsmart.Rcheck/00install.out:

* installing *source* package ‘KCsmart’ ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for ‘write.table’ from package ‘utils’ in package ‘KCsmart’
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘KCS.Rnw’ 
** testing if installed package can be loaded
* DONE (KCsmart)

KCsmart.Rcheck/KCsmart-Ex.timings:

nameusersystemelapsed
KCsmart-package47.579 0.59249.644
calcSpm2.3640.0442.781
calcSpmCollection19.661 0.09220.449
compKc-class0.0120.0000.013
compKcSigRegions-class0.0080.0000.008
compareSpmCollection18.457 0.15219.402
findSigLevelFdr5.7890.0405.832
findSigLevelTrad4.7640.0084.853
getSigRegionsCompKC24.905 0.13225.097
getSigSegments5.0570.0165.384
idPoints0.0280.0000.028
plot6.6800.0526.846
plotScaleSpace11.741 0.02011.902
samplePointMatrix-class0.0080.0000.008
sigSegments-class0.0240.0000.025
spmCollection-class0.0040.0040.009
write.table4.9840.0165.014