Rgraphviz 1.34.2
Kasper Hansen
| Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/Rgraphviz | | Last Changed Rev: 68479 / Revision: 69725 | | Last Changed Date: 2012-08-15 09:43:56 -0700 (Wed, 15 Aug 2012) |
| lamb2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] |
| petty | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
install for i386
* installing *source* package 'Rgraphviz' ...
Using the following environment variables
GRAPHVIZ_INSTALL_DIR=c:/graphviz/i386
GRAPHVIZ_INSTALL_MAJOR=2
GRAPHVIZ_INSTALL_MINOR=20
GRAPHVIZ_INSTALL_SUBMINOR=3
Using the following compilation and linking flags for Rgraphviz
PKG_CPPFLAGS=-Ic:/graphviz/i386/include/graphviz
PKG_LIBS=-Lc:/graphviz/i386/bin -lgvc-4 -lgraph-4 -lcdt-4
GVIZ_DEFS=-DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32
Created file src/Makevars.win
Created file R/graphviz_build_version.R
** libs
gcc -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -Ic:/graphviz/i386/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32 -O3 -Wall -std=gnu99 -mtune=core2 -c LL_funcs.c -o LL_funcs.o
LL_funcs.c: In function 'Rgraphviz_agopenSimple':
LL_funcs.c:464:29: warning: variable 'curNode' set but not used [-Wunused-but-set-variable]
gcc -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -Ic:/graphviz/i386/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32 -O3 -Wall -std=gnu99 -mtune=core2 -c Rgraphviz.c -o Rgraphviz.o
gcc -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -Ic:/graphviz/i386/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32 -O3 -Wall -std=gnu99 -mtune=core2 -c RgraphvizInit.c -o RgraphvizInit.o
gcc -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -Ic:/graphviz/i386/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32 -O3 -Wall -std=gnu99 -mtune=core2 -c agopen.c -o agopen.o
gcc -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -Ic:/graphviz/i386/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32 -O3 -Wall -std=gnu99 -mtune=core2 -c agread.c -o agread.o
gcc -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -Ic:/graphviz/i386/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32 -O3 -Wall -std=gnu99 -mtune=core2 -c agwrite.c -o agwrite.o
gcc -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -Ic:/graphviz/i386/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32 -O3 -Wall -std=gnu99 -mtune=core2 -c bezier.c -o bezier.o
gcc -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -Ic:/graphviz/i386/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32 -O3 -Wall -std=gnu99 -mtune=core2 -c buildEdgeList.c -o buildEdgeList.o
gcc -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -Ic:/graphviz/i386/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32 -O3 -Wall -std=gnu99 -mtune=core2 -c buildNodeList.c -o buildNodeList.o
gcc -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -Ic:/graphviz/i386/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32 -O3 -Wall -std=gnu99 -mtune=core2 -c doLayout.c -o doLayout.o
gcc -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -Ic:/graphviz/i386/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32 -O3 -Wall -std=gnu99 -mtune=core2 -c graphvizVersion.c -o graphvizVersion.o
gcc -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -Ic:/graphviz/i386/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32 -O3 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
gcc -shared -s -static-libgcc -o Rgraphviz.dll tmp.def LL_funcs.o Rgraphviz.o RgraphvizInit.o agopen.o agread.o agwrite.o bezier.o buildEdgeList.o buildNodeList.o doLayout.o graphvizVersion.o init.o -Lc:/graphviz/i386/bin -lgvc-4 -lgraph-4 -lcdt-4 -LE:/biocbld/BBS-2~1.10-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.10-bioc/meat/Rgraphviz.buildbin-libdir/Rgraphviz/libs/i386
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'head' from package 'utils' in package 'Rgraphviz'
Creating a generic function for 'tail' from package 'utils' in package 'Rgraphviz'
Creating a generic function for 'lines' from package 'graphics' in package 'Rgraphviz'
** help
*** installing help indices
** building package indices
** installing vignettes
'Rgraphviz.Rnw'
'newRgraphvizInterface.Rnw'
** testing if installed package can be loaded
install for x64
* installing *source* package 'Rgraphviz' ...
Using the following environment variables
GRAPHVIZ_INSTALL_DIR=c:/graphviz/x64
GRAPHVIZ_INSTALL_MAJOR=2
GRAPHVIZ_INSTALL_MINOR=25
GRAPHVIZ_INSTALL_SUBMINOR=20090912.0445
Using the following compilation and linking flags for Rgraphviz
PKG_CPPFLAGS=-Ic:/graphviz/x64/include/graphviz
PKG_LIBS=-Lc:/graphviz/x64/bin -lgvc-5 -lgraph-4 -lcdt-4
GVIZ_DEFS=-DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=25 -DWin32
Created file src/Makevars.win
Created file R/graphviz_build_version.R
** libs
gcc -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -Ic:/graphviz/x64/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=25 -DWin32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c LL_funcs.c -o LL_funcs.o
LL_funcs.c: In function 'Rgraphviz_agopenSimple':
LL_funcs.c:464:29: warning: variable 'curNode' set but not used [-Wunused-but-set-variable]
gcc -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -Ic:/graphviz/x64/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=25 -DWin32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c Rgraphviz.c -o Rgraphviz.o
gcc -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -Ic:/graphviz/x64/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=25 -DWin32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c RgraphvizInit.c -o RgraphvizInit.o
gcc -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -Ic:/graphviz/x64/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=25 -DWin32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c agopen.c -o agopen.o
gcc -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -Ic:/graphviz/x64/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=25 -DWin32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c agread.c -o agread.o
gcc -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -Ic:/graphviz/x64/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=25 -DWin32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c agwrite.c -o agwrite.o
gcc -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -Ic:/graphviz/x64/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=25 -DWin32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c bezier.c -o bezier.o
gcc -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -Ic:/graphviz/x64/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=25 -DWin32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c buildEdgeList.c -o buildEdgeList.o
gcc -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -Ic:/graphviz/x64/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=25 -DWin32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c buildNodeList.c -o buildNodeList.o
gcc -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -Ic:/graphviz/x64/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=25 -DWin32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c doLayout.c -o doLayout.o
gcc -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -Ic:/graphviz/x64/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=25 -DWin32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c graphvizVersion.c -o graphvizVersion.o
gcc -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -Ic:/graphviz/x64/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=25 -DWin32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
gcc -m64 -shared -s -static-libgcc -o Rgraphviz.dll tmp.def LL_funcs.o Rgraphviz.o RgraphvizInit.o agopen.o agread.o agwrite.o bezier.o buildEdgeList.o buildNodeList.o doLayout.o graphvizVersion.o init.o -Lc:/graphviz/x64/bin -lgvc-5 -lgraph-4 -lcdt-4 -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2~1.10-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.10-bioc/meat/Rgraphviz.buildbin-libdir/Rgraphviz/libs/x64
** testing if installed package can be loaded
Warning in fun(libname, pkgname) :
Rgraphviz built with Graphviz version 2.20.3.
Found installed Graphviz version 2.25.20090912.445. This _may_ cause problems.
* MD5 sums
packaged installation of 'Rgraphviz' as Rgraphviz_1.34.2.zip
* DONE (Rgraphviz)