Package: MLInterfaces

Version: 1.36.0

Command: /home/hpages/test-puck5/bbs-2.10-bioc/R/bin/R CMD check --no-vignettes --timings MLInterfaces_1.36.0.tar.gz

StartedAt: 2012-04-01 02:13:34 -0700 (Sun, 01 Apr 2012)

EndedAt: 2012-04-01 02:16:36 -0700 (Sun, 01 Apr 2012)

EllapsedTime: 182.7 seconds

RetCode: 0

Status:  OK

CheckDir: MLInterfaces.Rcheck

Warnings: 0

* using log directory '/loc/home/hpages/test-puck5/bbs-2.10-bioc/meat/MLInterfaces.Rcheck'
* using R version 2.15.0 RC (2012-03-22 r58802)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MLInterfaces/DESCRIPTION' ... OK
* this is package 'MLInterfaces' version '1.36.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'MLInterfaces' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
RAB4es: warning in RAB(ff, data = ee, maxit = maxit, maxdepth =
  maxdepth): partial argument match of 'maxit' to 'maxiter'
fs.absT : <anonymous>: warning in sort(abs(ans), decr = TRUE): partial
  argument match of 'decr' to 'decreasing'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/loc/home/hpages/test-puck5/bbs-2.10-bioc/meat/MLInterfaces.Rcheck/00check.log'
for details.

* installing *source* package 'MLInterfaces' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'MLInterfaces.Rnw' 
   'MLint_devel.Rnw' 
   'MLprac2_2.Rnw' 
   'xvalComputerClusters.Rnw' 
** testing if installed package can be loaded

* DONE (MLInterfaces)

name	user	system	elapsed
MLearn-new	15.737	0.188	16.551
RAB	0.144	0.004	0.206
balKfold.xvspec	0.016	0.000	0.045
classifierOutput-class	3.408	0.004	3.448
clusteringOutput-class	0.000	0.000	0.001
confuMat-methods	0.268	0.008	0.301
fs.absT	0.012	0.004	0.016
fsHistory	0.088	0.004	0.115
learnerSchema-class	0	0	0
planarPlot-methods	2.264	0.052	2.383
predict.classifierOutput	3.269	0.008	3.371
raboostCont-class	0.004	0.000	0.001
varImpStruct-class	0.820	0.036	0.942
xvalLoop	0	0	0
xvalSpec	0.180	0.000	0.202