plier 1.8.0
Crispin Miller
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/plier | | Last Changed Rev: 27709 / Revision: 30966 | | Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/plier.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'plier/DESCRIPTION' ... OK
* this is package 'plier' version '1.8.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'plier' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating plier-Ex.R ... OK
* checking examples ... OK
* creating plier-manual.tex ... OK
* checking plier-manual.tex ... OK
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/plier.Rcheck
---------- Making package plier ------------
adding build stamp to DESCRIPTION
making DLL ...
making affyplier.d from affyplier.cpp
making plier_impl.d from plier_impl.cpp
making plieralg.d from plieralg.cpp
making rwrapper.d from rwrapper.cpp
g++-sjlj -Id:/biocbld/bbs-2.1-bioc/R/include -O2 -Wall -c affyplier.cpp -o affyplier.o
g++-sjlj -Id:/biocbld/bbs-2.1-bioc/R/include -O2 -Wall -c plier_impl.cpp -o plier_impl.o
g++-sjlj -Id:/biocbld/bbs-2.1-bioc/R/include -O2 -Wall -c plieralg.cpp -o plieralg.o
plieralg.cpp: In function 'long int NewtonPlier(plier_data*, double&)':
plieralg.cpp:909: warning: 'LogLikelihood' may be used uninitialized in this function
plieralg.cpp: At global scope:
plieralg.cpp:48: warning: 'g_ErrorCode' defined but not used
g++-sjlj -Id:/biocbld/bbs-2.1-bioc/R/include -O2 -Wall -c rwrapper.cpp -o rwrapper.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.1-bioc/R/include -i plier_res.rc -o plier_res.o
g++-sjlj -shared -s -o plier.dll plier.def affyplier.o plier_impl.o plieralg.o rwrapper.o plier_res.o -Ld:/biocbld/bbs-2.1-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'plier'
Formats: text html latex example chm
justPlier text html latex example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\plier.Rcheck\00_pkg_src\plier\chm\plier.chm
HHC4016: Warning: Cannot open "gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
adding MD5 sums
* DONE (plier)