Package: pdmclass

Version: 1.10.0

Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check pdmclass_1.10.0.tar.gz

StartedAt: 2008-04-09 19:33:43 -0700 (Wed, 09 Apr 2008)

EndedAt: 2008-04-09 19:40:23 -0700 (Wed, 09 Apr 2008)

EllapsedTime: 399.3 seconds

RetCode: 0

Status: OK

CheckDir: pdmclass.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.1-bioc/meat/pdmclass.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'pdmclass/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'pdmclass' version '1.10.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'pdmclass' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
pdmGenes: no visible binding for global variable 'response'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating pdmclass-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating pdmclass-manual.tex ... OK
* checking pdmclass-manual.tex ... OK

* Installing *source* package 'pdmclass' ...
** R
** inst
** help
 >>> Building/Updating help pages for package 'pdmclass'
     Formats: text html latex example 
  my.svd                            text    html    latex
  pdmClass                          text    html    latex   example
  pdmClass.cv                       text    html    latex   example
  pdmGenes                          text    html    latex   example
  pls1c                             text    html    latex
  predict.pls                       text    html    latex   example
  svdpls1c                          text    html    latex
  svdr                              text    html    latex
** building package indices ...
* DONE (pdmclass)