limma 2.12.0
Gordon Smyth
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/limma | | Last Changed Rev: 30676 / Revision: 30966 | | Last Changed Date: 2008-03-25 17:47:32 -0700 (Tue, 25 Mar 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/limma.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'limma/DESCRIPTION' ... OK
* this is package 'limma' version '2.12.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'limma' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating limma-Ex.R ... OK
* checking examples ... OK
* checking tests ...
make[1]: Entering directory `/cygdrive/d/biocbld/bbs-2.1-bioc/meat/limma.Rcheck/tests'
Running 'limma-Tests.R'
Comparing 'limma-Tests.Rout' to 'limma-Tests.Rout.save' ...OK
make[1]: Leaving directory `/cygdrive/d/biocbld/bbs-2.1-bioc/meat/limma.Rcheck/tests'
OK
* checking package vignettes in 'inst/doc' ... OK
* creating limma-manual.tex ... OK
* checking limma-manual.tex ... OK
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/limma.Rcheck
---------- Making package limma ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
preparing package limma for lazy loading
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'limma'
Formats: text html latex example chm
01Introduction text html latex chm
02classes text html latex chm
03reading text html latex chm
04Background text html latex chm
05Normalization text html latex chm
06linearmodels text html latex chm
07SingleChannel text html latex chm
08Tests text html latex chm
09Diagnostics text html latex chm
10Other text html latex chm
LargeDataObject text html latex example chm
PrintLayout text html latex example chm
TestResults text html latex example chm
anova-method text html latex chm
arrayWeights text html latex example chm
arrayWeightsQuick text html latex example chm
asMatrixWeights text html latex example chm
asdataframe text html latex chm
asmalist text html latex chm
asmatrix text html latex chm
auROC text html latex example chm
avedups text html latex chm
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cbind text html latex example chm
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channel2M text html latex example chm
classifytests text html latex example chm
contrasts.fit text html latex example chm
controlStatus text html latex example chm
convest text html latex example chm
decideTests text html latex chm
dim text html latex example chm
dimnames text html latex chm
dnormexp text html latex chm
dupcor text html latex example chm
ebayes text html latex example chm
exprsMA text html latex chm
exprset2 text html latex chm
fitfdist text html latex chm
fitted.MArrayLM text html latex chm
geneSetTest text html latex example chm
getSpacing text html latex example chm
getlayout text html latex example chm
gls.series text html latex chm
gridspotrc text html latex chm
heatdiagram text html latex example chm
helpMethods text html latex example chm
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imageplot3by2 text html latex chm
intraspotCorrelation text html latex example chm
isfullrank text html latex example chm
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kooperberg text html latex example chm
limmaUsersGuide text html latex example chm
lm.series text html latex chm
lmFit text html latex example chm
lmscFit text html latex example chm
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m.spot text html latex chm
ma3x3 text html latex example chm
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poolvar text html latex example chm
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printtipWeights text html latex example chm
protectMetachar text html latex example chm
qqt text html latex example chm
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readImaGeneHeader text html latex example chm
readSpotTypes text html latex chm
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readgal text html latex example chm
removeext text html latex example chm
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rg.genepix text html latex chm
rg.quantarray text html latex chm
rg.series.spot text html latex chm
rg.spot text html latex chm
rglist text html latex chm
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squeezeVar text html latex example chm
strsplit2 text html latex example chm
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summary text html latex chm
targetsA2C text html latex example chm
tmixture text html latex chm
toptable text html latex example chm
trigammainverse text html latex example chm
trimWhiteSpace text html latex example chm
uniquegenelist text html latex example chm
unwrapdups text html latex example chm
venn text html latex example chm
volcanoplot text html latex example chm
weightedmedian text html latex example chm
writefit text html latex chm
zscore text html latex example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\limma.Rcheck\00_pkg_src\limma\chm\limma.chm
HHC4016: Warning: Cannot open "GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
adding MD5 sums
* DONE (limma)