annaffy 1.10.1
Colin A. Smith
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/annaffy | | Last Changed Rev: 28550 / Revision: 30966 | | Last Changed Date: 2007-11-07 13:51:28 -0800 (Wed, 07 Nov 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/annaffy.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'annaffy/DESCRIPTION' ... OK
* this is package 'annaffy' version '1.10.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'annaffy' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating annaffy-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating annaffy-manual.tex ... OK
* checking annaffy-manual.tex ... OK
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/annaffy.Rcheck
---------- Making package annaffy ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
preparing package annaffy for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: GO
Loading required package: KEGG
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'annaffy'
Formats: text html latex example chm
aaf.character text html latex chm
aaf.goterm text html latex chm
aaf.handler text html latex chm
aaf.integer text html latex chm
aaf.raw text html latex chm
aafChromLoc-class text html latex chm
aafChromLoc text html latex example chm
aafChromosome-class text html latex chm
aafChromosome text html latex example chm
aafCytoband-class text html latex chm
aafCytoband text html latex example chm
aafDescription-class text html latex chm
aafDescription text html latex example chm
aafExpr text html latex chm
aafGO-class text html latex chm
aafGO text html latex example chm
aafGOItem-class text html latex chm
aafGenBank-class text html latex chm
aafGenBank text html latex example chm
aafIntensity-class text html latex chm
aafList-class text html latex chm
aafLocusLink-class text html latex chm
aafLocusLink text html latex example chm
aafPathway-class text html latex chm
aafPathway text html latex example chm
aafPathwayItem-class text html latex chm
aafProbe-class text html latex chm
aafProbe text html latex example chm
aafPubMed-class text html latex chm
aafPubMed text html latex example chm
aafSearchGO text html latex chm
aafSearchText text html latex example chm
aafSigned-class text html latex chm
aafSymbol-class text html latex chm
aafSymbol text html latex example chm
aafTable-class text html latex chm
aafTable text html latex chm
aafTableAnn text html latex chm
aafTableFrame text html latex chm
aafTableInt text html latex chm
aafUniGene-class text html latex chm
aafUniGene text html latex example chm
chkPkgs text html latex chm
getCSS-methods text html latex chm
getHTML-methods text html latex chm
getTD-methods text html latex chm
getText-methods text html latex chm
getURL-methods text html latex chm
is.annpkg text html latex example chm
selectorWidget text html latex chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "rogram Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\annaffy.Rcheck\00_pkg_src\annaffy\chm\annaffy.chm
HHC4016: Warning: Cannot open "rogram Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
adding MD5 sums
* DONE (annaffy)