affy 1.16.0
Rafael A. Irizarry
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/affy | | Last Changed Rev: 27709 / Revision: 30966 | | Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | [ OK ] | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for file 'affy/DESCRIPTION' ... OK
* preparing 'affy':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst388091571
---------- Making package affy ------------
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
adding build stamp to DESCRIPTION
making DLL ...
making chipbackground.d from chipbackground.c
making getall_locations.d from getall_locations.c
making mas5calls.d from mas5calls.c
making rma2.d from rma2.c
making rma_background2.d from rma_background2.c
making rma_common.d from rma_common.c
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/src/extra/zlib -DHAVE_ZLIB -Id:/biocbld/bbs-2.1-bioc/R/include -I"d:/biocbld/bbs-2.1-bioc/R/library/preprocessCore/include" -O3 -Wall -c chipbackground.c -o chipbackground.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/src/extra/zlib -DHAVE_ZLIB -Id:/biocbld/bbs-2.1-bioc/R/include -I"d:/biocbld/bbs-2.1-bioc/R/library/preprocessCore/include" -O3 -Wall -c getall_locations.c -o getall_locations.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/src/extra/zlib -DHAVE_ZLIB -Id:/biocbld/bbs-2.1-bioc/R/include -I"d:/biocbld/bbs-2.1-bioc/R/library/preprocessCore/include" -O3 -Wall -c mas5calls.c -o mas5calls.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/src/extra/zlib -DHAVE_ZLIB -Id:/biocbld/bbs-2.1-bioc/R/include -I"d:/biocbld/bbs-2.1-bioc/R/library/preprocessCore/include" -O3 -Wall -c rma2.c -o rma2.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/src/extra/zlib -DHAVE_ZLIB -Id:/biocbld/bbs-2.1-bioc/R/include -I"d:/biocbld/bbs-2.1-bioc/R/library/preprocessCore/include" -O3 -Wall -c rma_background2.c -o rma_background2.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/src/extra/zlib -DHAVE_ZLIB -Id:/biocbld/bbs-2.1-bioc/R/include -I"d:/biocbld/bbs-2.1-bioc/R/library/preprocessCore/include" -O3 -Wall -c rma_common.c -o rma_common.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.1-bioc/R/include -i affy_res.rc -o affy_res.o
gcc-sjlj -std=gnu99 -shared -s -o affy.dll affy.def chipbackground.o getall_locations.o mas5calls.o rma2.o rma_background2.o rma_common.o affy_res.o -Ld:/biocbld/bbs-2.1-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing demos
installing inst files
installing data files
preparing package affy for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affyio
Loading required package: preprocessCore
Creating a new generic function for "open" in "affy"
Creating a new generic function for "update" in "affy"
Creating a new generic function for "close" in "affy"
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'affy'
Formats: text html latex example chm
AffyBatch-class text html latex example chm
AffyRNAdeg text html latex example chm
MAplot text html latex example chm
ProbeSet-class text html latex example chm
ProgressBarText-class text html latex example chm
SpikeIn text html latex chm
affy-options text html latex example chm
affy.scalevalue.exprSet text html latex chm
affybatch.example text html latex chm
barplot.ProbeSet text html latex example chm
bg.adjust text html latex chm
bgc text html latex example chm
cdfFromBioC text html latex example chm
cdfenv.example text html latex chm
cleancdfname text html latex example chm
debug.affy123 text html latex chm
expresso text html latex example chm
expressoWidget text html latex example chm
fit.li.wong text html latex example chm
generateExprSet-methods text html latex example chm
generateExprVal-methods text html latex example chm
generateExprVal.method.avgdiff text html latex example chm
generateExprVal.method.playerout text html latex chm
hlog text html latex chm
justrma text html latex example chm
list.celfiles text html latex example chm
loess.normalize text html latex chm
maffy.normalise text html latex example chm
maffy.subset text html latex example chm
mas5 text html latex example chm
mas5calls text html latex example chm
merge.AffyBatch text html latex example chm
multiloess text html latex chm
mva.pairs text html latex example chm
normalize-methods text html latex example chm
normalize text html latex chm
normalize.constant text html latex chm
normalize.contrast text html latex example chm
normalize.invariantset text html latex chm
normalize.loess text html latex example chm
normalize.qspline text html latex chm
normalize.quantiles text html latex chm
normalize.quantiles.robust text html latex chm
pairs.AffyBatch text html latex example chm
plot.ProbeSet text html latex example chm
plot.density text html latex example chm
plotLocation text html latex example chm
pmcorrect text html latex example chm
ppsetApply text html latex example chm
probeMatch-methods text html latex chm
probeNames-methods text html latex chm
read.affybatch text html latex example chm
read.probematrix text html latex example chm
rma text html latex example chm
setAffyOptions text html latex example chm
simplemultiLoess text html latex chm
summary text html latex chm
tukey.biweight text html latex chm
whatcdf text html latex chm
xy2indices text html latex example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "n;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\affy\chm\affy.chm
HHC4016: Warning: Cannot open "n;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
adding MD5 sums
* DONE (affy)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'affy_1.16.0.tar.gz'