adSplit 1.8.0
Claudio Lottaz
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/adSplit | | Last Changed Rev: 27709 / Revision: 30966 | | Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/adSplit.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'adSplit/DESCRIPTION' ... OK
* this is package 'adSplit' version '1.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'adSplit' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
figure_ccimage: no visible global function definition for 'cc_image'
figure_ccimage: no visible binding for global variable 'res'
figure_induced: no visible binding for global variable 'rossResult'
figure_induced: no visible global function definition for 'oneGOGraph'
figure_induced: no visible global function definition for 'GOGraph'
figure_induced: no visible global function definition for 'join'
figure_induced: no visible global function definition for 'nodes'
figure_induced: no visible global function definition for 'edges'
image.splitSet: no visible binding for '<<-' assignment to 'root.dist'
image.splitSet: no visible binding for global variable 'root.dist'
image.splitSet: no visible global function definition for
'collect.lines'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'hist.splitSet':
hist.splitSet
S3 methods shown with full name in documentation object 'image.splitSet':
image.splitSet
S3 methods shown with full name in documentation object 'print.split':
print.split
S3 methods shown with full name in documentation object 'print.splitSet':
print.splitSet
The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating adSplit-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating adSplit-manual.tex ... OK
* checking adSplit-manual.tex ... OK
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/adSplit.Rcheck
---------- Making package adSplit ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making adSplit.d from adSplit.cpp
g++-sjlj -Id:/biocbld/bbs-2.1-bioc/R/include -O2 -Wall -c adSplit.cpp -o adSplit.o
adSplit.cpp: In function 'double tscore(double*, int, int, split&, isis_pars&)':
adSplit.cpp:253: warning: deprecated conversion from string constant to 'char*'
adSplit.cpp: In function 'void isis(char**, double*, int*, int*, int*, int*, int*, double*, int*)':
adSplit.cpp:466: warning: deprecated conversion from string constant to 'char*'
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.1-bioc/R/include -i adSplit_res.rc -o adSplit_res.o
g++-sjlj -shared -s -o adSplit.dll adSplit.def adSplit.o adSplit_res.o -Ld:/biocbld/bbs-2.1-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package adSplit for lazy loading
Loading required package: cluster
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: survival
Loading required package: splines
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: GO
Loading required package: KEGG
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'adSplit'
Formats: text html latex example chm
adSplit-internal text html latex chm
adSplit text html latex example chm
diana2means text html latex example chm
drawRandomPS text html latex example chm
golubKEGGSplits text html latex example chm
hist.splitSet text html latex example chm
image.splitSet text html latex example chm
makeEID2PROBESenv text html latex example chm
print.split text html latex chm
print.splitSet text html latex example chm
randomDiana2means text html latex example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "rogram Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\adSplit.Rcheck\00_pkg_src\adSplit\chm\adSplit.chm
HHC4016: Warning: Cannot open "rogram Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
adding MD5 sums
* DONE (adSplit)