VanillaICE 1.0.2
Robert Scharpf
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/VanillaICE | | Last Changed Rev: 27988 / Revision: 30966 | | Last Changed Date: 2007-10-14 10:06:21 -0700 (Sun, 14 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/VanillaICE.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'VanillaICE/DESCRIPTION' ... OK
* this is package 'VanillaICE' version '1.0.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'VanillaICE' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating VanillaICE-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating VanillaICE-manual.tex ... OK
* checking VanillaICE-manual.tex ... OK
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/VanillaICE.Rcheck
---------- Making package VanillaICE ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
preparing package VanillaICE for lazy loading
Loading required package: SNPchip
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: oligoClasses
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'VanillaICE'
Formats: text html latex example chm
HmmSnpCallSet-class text html latex example chm
HmmSnpCopyNumberSet-class text html latex example chm
HmmSnpSet-class text html latex example chm
ParHSet-class text html latex example chm
ParHmmSnpCallSet-class text html latex example chm
ParHmmSnpCopyNumberSet-class text html latex example chm
ParHmmSnpSet-class text html latex example chm
bind text html latex example chm
breakpoints text html latex example chm
byArm text html latex example chm
calculateEmissionProbability text html latex example chm
callEmission text html latex example chm
callsIce text html latex example chm
chromosome1 text html latex example chm
chromosomeArm text html latex example chm
copyNumberIce text html latex example chm
distance text html latex example chm
emissionProbability text html latex example chm
getCallEmission text html latex example chm
getCopyNumberLocation text html latex example chm
getCopyNumberScale text html latex example chm
getHapmapProbabilities text html latex example chm
getInitialStateProbability text html latex example chm
getLohProbability text html latex example chm
getTransitionProbability text html latex example chm
hSet-class text html latex example chm
hapmapProbabilities text html latex example chm
hmm text html latex example chm
hmmBySample text html latex example chm
initialStateProbability text html latex example chm
isMissing text html latex example chm
likelihood text html latex example chm
locationCopyNumber text html latex example chm
numberStates text html latex example chm
pCHOM text html latex example chm
plotPredictions text html latex example chm
predictions text html latex example chm
scaleCopyNumber text html latex example chm
stateNames text html latex example chm
transitionProbability text html latex example chm
viterbi text html latex example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "es\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\VanillaICE.Rcheck\00_pkg_src\VanillaICE\chm\VanillaICE.chm
HHC4016: Warning: Cannot open "es\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
adding MD5 sums
* DONE (VanillaICE)