SAGx 1.12.0
Per Broberg
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/SAGx | | Last Changed Rev: 27709 / Revision: 30966 | | Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | [ OK ] | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for file 'SAGx/DESCRIPTION' ... OK
* preparing 'SAGx':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst400071691
---------- Making package SAGx ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making minigsea.d from minigsea.c
making newboot.d from newboot.c
making samrocNboot.d from samrocNboot.c
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c minigsea.c -o minigsea.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c newboot.c -o newboot.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c samrocNboot.c -o samrocNboot.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.1-bioc/R/include -i SAGx_res.rc -o SAGx_res.o
gcc-sjlj -std=gnu99 -shared -s -o SAGx.dll SAGx.def minigsea.o newboot.o samrocNboot.o SAGx_res.o -Ld:/biocbld/bbs-2.1-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
preparing package SAGx for lazy loading
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: survival
Loading required package: splines
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'SAGx'
Formats: text html latex example chm
Fstat text html latex example chm
GSEA.mean.t text html latex chm
JT.test text html latex example chm
R2BASE text html latex chm
R2mim text html latex chm
Xprep text html latex chm
Xprep.resid text html latex chm
clin2mim text html latex chm
cluster.q text html latex chm
estimatep0 text html latex chm
fetchSignal text html latex example chm
firstpass text html latex example chm
fom text html latex chm
fp.fn text html latex chm
gap text html latex example chm
list.experiments text html latex example chm
list.intersection.p text html latex chm
mat2TeX text html latex chm
myclus text html latex example chm
normalise text html latex chm
one.probeset.per.gene text html latex chm
outlier text html latex example chm
p0.mom text html latex chm
pava.fdr text html latex chm
pava text html latex example chm
rank.genes text html latex chm
rank.trend text html latex example chm
rsd.test text html latex chm
samroc.result-class text html latex chm
samrocn text html latex chm
samrocnboot text html latex example chm
union.of.pways text html latex example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "n;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\SAGx\chm\SAGx.chm
HHC4016: Warning: Cannot open "n;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
adding MD5 sums
* DONE (SAGx)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'SAGx_1.12.0.tar.gz'