MCRestimate 1.10.5
Markus Ruschhaupt
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/MCRestimate | | Last Changed Rev: 29418 / Revision: 30966 | | Last Changed Date: 2008-01-07 02:05:19 -0800 (Mon, 07 Jan 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/MCRestimate.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'MCRestimate/DESCRIPTION' ... OK
* this is package 'MCRestimate' version '1.10.5'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MCRestimate' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating MCRestimate-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating MCRestimate-manual.tex ... OK
* checking MCRestimate-manual.tex ... OK
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/MCRestimate.Rcheck
---------- Making package MCRestimate ------------
adding build stamp to DESCRIPTION
installing R files
installing inst files
preparing package MCRestimate for lazy loading
Loading required package: e1071
Loading required package: class
Loading required package: pamr
Loading required package: cluster
Loading required package: survival
Loading required package: splines
Loading required package: randomForest
randomForest 4.5-23
Type rfNews() to see new features/changes/bug fixes.
Loading required package: RColorBrewer
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Attaching package: 'Biobase'
The following object(s) are masked from package:randomForest :
combine
Loading required package: golubEsets
Loading required package: arrayMagic
Loading required package: vsn
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: limma
Loading required package: genefilter
Loading required package: gpls
Loading required package: ROC
Attaching package: 'ROC'
The following object(s) are masked from package:genefilter :
AUC,
pAUC
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'MCRestimate'
Formats: text html latex example chm
ClassifierBuild text html latex example chm
MCRconfusion text html latex example chm
MCRestimate text html latex example chm
MCRestimateMerge text html latex example chm
PLR text html latex example chm
PLR.add.fkt text html latex example chm
SVM.OVA.wrap text html latex example chm
class.factor.format text html latex example chm
gene.reduction.fkt text html latex example chm
geneReduction text html latex example chm
important.variable.names text html latex example chm
intersectList text html latex example chm
plot.MCRestimate text html latex example chm
replace.NA text html latex example chm
select.NA.elements text html latex example chm
whatiscorrect text html latex example chm
wrapper.fkt text html latex example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "iles\UltraEdit;c:\Program Files\Intel\DMIX;c:\Program Files\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server ".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\MCRestimate.Rcheck\00_pkg_src\MCRestimate\chm\MCRestimate.chm
HHC4016: Warning: Cannot open "iles\UltraEdit;c:\Program Files\Intel\DMIX;c:\Program Files\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server ".
The following files were not compiled:
adding MD5 sums
* DONE (MCRestimate)