CALIB 1.4.0
Hui Zhao
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/CALIB | | Last Changed Rev: 27709 / Revision: 30966 | | Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/CALIB.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'CALIB/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CALIB' version '1.4.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'CALIB' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getColClasses: no visible global function definition for 'namesInFun'
plotSpikeCI: no visible binding for global variable 'otherindex'
read.rg: no visible global function definition for 'readBlueFuseHeader'
read.spike: no visible binding for global variable 'files'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating CALIB-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating CALIB-manual.tex ... OK
* checking CALIB-manual.tex ... OK
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/CALIB.Rcheck
---------- Making package CALIB ------------
adding build stamp to DESCRIPTION
making DLL ...
making Design.d from Design.cpp
making Estimation.d from Estimation.cpp
making NormalizedData.d from NormalizedData.cpp
making ParameterofOneArray.d from ParameterofOneArray.cpp
making RawDataofOneArray.d from RawDataofOneArray.cpp
making SpikeofOneArray.d from SpikeofOneArray.cpp
g++-sjlj -Id:/biocbld/bbs-2.1-bioc/R/include -O2 -Wall -c Design.cpp -o Design.o
g++-sjlj -Id:/biocbld/bbs-2.1-bioc/R/include -O2 -Wall -c Estimation.cpp -o Estimation.o
Estimation.cpp: In function 'SEXPREC* estimation(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
Estimation.cpp:144: warning: deprecated conversion from string constant to 'char*'
Estimation.cpp:144: warning: deprecated conversion from string constant to 'char*'
Estimation.cpp:144: warning: deprecated conversion from string constant to 'char*'
Estimation.cpp:144: warning: deprecated conversion from string constant to 'char*'
Estimation.cpp:144: warning: deprecated conversion from string constant to 'char*'
Estimation.cpp:144: warning: deprecated conversion from string constant to 'char*'
Estimation.cpp:144: warning: deprecated conversion from string constant to 'char*'
Estimation.cpp:144: warning: deprecated conversion from string constant to 'char*'
g++-sjlj -Id:/biocbld/bbs-2.1-bioc/R/include -O2 -Wall -c NormalizedData.cpp -o NormalizedData.o
g++-sjlj -Id:/biocbld/bbs-2.1-bioc/R/include -O2 -Wall -c ParameterofOneArray.cpp -o ParameterofOneArray.o
g++-sjlj -Id:/biocbld/bbs-2.1-bioc/R/include -O2 -Wall -c RawDataofOneArray.cpp -o RawDataofOneArray.o
g++-sjlj -Id:/biocbld/bbs-2.1-bioc/R/include -O2 -Wall -c SpikeofOneArray.cpp -o SpikeofOneArray.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.1-bioc/R/include -i CALIB_res.rc -o CALIB_res.o
g++-sjlj -shared -s -o CALIB.dll CALIB.def Design.o Estimation.o NormalizedData.o ParameterofOneArray.o RawDataofOneArray.o SpikeofOneArray.o CALIB_res.o -Ld:/biocbld/bbs-2.1-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'CALIB'
Formats: text html latex example chm
ParameterList-class text html latex chm
RG text html latex example chm
RGList_CALIB-class text html latex chm
SpikeList-class text html latex chm
adjustP2 text html latex example chm
calibReadMe text html latex example chm
cbind text html latex example chm
dim text html latex example chm
dimnames text html latex example chm
estimateParameter text html latex example chm
getColClasses text html latex example chm
merge text html latex example chm
normalizeData text html latex example chm
normdata text html latex example chm
parameter text html latex example chm
plotNormalizedData text html latex example chm
plotSpikeCI text html latex example chm
plotSpikeHI text html latex example chm
plotSpikeRG text html latex example chm
plotSpikeSpotError text html latex example chm
read.rg text html latex example chm
read.spike text html latex chm
spike text html latex example chm
subsetting text html latex example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\CALIB.Rcheck\00_pkg_src\CALIB\chm\CALIB.chm
HHC4016: Warning: Cannot open "\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
preparing package CALIB for lazy loading
Loading required package: limma
adding MD5 sums
* DONE (CALIB)