Package: sigPathway

Version: 1.6.0

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build sigPathway

RetCode: 0

Time: 34.4 seconds

Status: OK

PackageFile: sigPathway_1.6.0.tar.gz

* checking for file 'sigPathway/DESCRIPTION' ... OK
* preparing 'sigPathway':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.1-bioc/tmpdir/Rinst395615457


---------- Making package sigPathway ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making calc_gene_set_internal.d from calc_gene_set_internal.c
making calc_gene_set_stat.d from calc_gene_set_stat.c
making calc_probe_stat.d from calc_probe_stat.c
making calc_weights.d from calc_weights.c
making matrix_fn.d from matrix_fn.c
making permute.d from permute.c
making shuffle.d from shuffle.c
making sigPathway.d from sigPathway.c
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c calc_gene_set_internal.c -o calc_gene_set_internal.o
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c calc_gene_set_stat.c -o calc_gene_set_stat.o
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c calc_probe_stat.c -o calc_probe_stat.o
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c calc_weights.c -o calc_weights.o
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c matrix_fn.c -o matrix_fn.o
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c permute.c -o permute.o
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c shuffle.c -o shuffle.o
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c sigPathway.c -o sigPathway.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.1-bioc/R/include  -i sigPathway_res.rc -o sigPathway_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o sigPathway.dll sigPathway.def calc_gene_set_internal.o calc_gene_set_stat.o calc_probe_stat.o calc_weights.o matrix_fn.o permute.o shuffle.o sigPathway.o sigPathway_res.o  -Le:/biocbld/bbs-2.1-bioc/R/bin -Le:/biocbld/bbs-2.1-bioc/R/bin -lRlapack -Le:/biocbld/bbs-2.1-bioc/R/bin -lRblas -lgfortran   -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'sigPathway'
     Formats: text html latex example chm 
  MuscleExample                     text    html    latex           chm
  calcTNullFast                     text    html    latex           chm
  calcTStatFast                     text    html    latex   example chm
  calculate.GSEA                    text    html    latex           chm
  calculate.NGSk                    text    html    latex   example chm
  calculatePathwayStatistics        text    html    latex   example chm
  estimateNumPerm                   text    html    latex   example chm
  getPathwayStatistics.NGSk         text    html    latex           chm
  getPathwayStatistics              text    html    latex           chm
  importGeneSets                    text    html    latex           chm
  rankPathways.NGSk                 text    html    latex           chm
  rankPathways                      text    html    latex           chm
  runSigPathway                     text    html    latex   example chm
  selectGeneSets                    text    html    latex           chm
  writeSigPathway                   text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.1-bioc\meat\sigPathway\chm\sigPathway.chm





Compile time: 0 minutes, 0 seconds

16	Topics

39	Local links

11	Internet links

1	Graphic





Created e:\biocbld\bbs-2.1-bioc\meat\sigPathway\chm\sigPathway.chm, 39,503 bytes

Compression decreased file by 32,047 bytes.

  preparing package sigPathway for lazy loading
  adding MD5 sums

* DONE (sigPathway)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
    file 'sigPathway/src/Makevars' had non-LF line endings
* checking for empty or unneeded directories
* building 'sigPathway_1.6.0.tar.gz'