Package: reb

Version: 1.12.0

Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build reb

RetCode: 0

Time: 53.8 seconds

Status: OK

PackageFile: reb_1.12.0.tar.gz

* checking for file 'reb/DESCRIPTION' ... OK
* preparing 'reb':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'reb' ...
** libs
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c movbin.c -o movbin.o
movbin.c: In function `bcount':
movbin.c:37: warning: suggest parentheses around comparison in operand of &
movbin.c: In function `bscore':
movbin.c:48: warning: implicit declaration of function `sqrt'
movbin.c: In function `mean':
movbin.c:63: warning: suggest parentheses around comparison in operand of &
movbin.c: In function `mspan_mov_binom_mx':
movbin.c:128: warning: unused variable `im_mx'
movbin.c: In function `mspan_mov_binom':
movbin.c:145: warning: unused variable `r'
movbin.c:145: warning: unused variable `c'
movbin.c: In function `main':
movbin.c:158: warning: unused variable `data'
movbin.c:160: warning: unused variable `gx2'
movbin.c:161: warning: unused variable `im_vec'
movbin.c:161: warning: unused variable `im_mx'
movbin.c:162: warning: unused variable `sum_vec'
movbin.c:162: warning: unused variable `sum_mx'
movbin.c:163: warning: unused variable `range'
movbin.c:166: warning: unused variable `rlen'
movbin.c:168: warning: unused variable `nr'
gcc -std=gnu99 -shared -L/usr/local/lib -o reb.so movbin.o   -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lR
** R
** data
** inst
** help
Note: unmatched right brace in 'regmap' on or after line 15
 >>> Building/Updating help pages for package 'reb'
     Formats: text html latex example 
  Hs.arms                           text    html    latex
  absMax                            text    html    latex   example
  buildChromCytoband                text    html    latex   example
  buildChromMap                     text    html    latex   example
  cset2band                         text    html    latex   example
  fromRevIsh                        text    html    latex   example
  isAbnormal                        text    html    latex   example
  mcr.eset                          text    html    latex   example
  movbin                            text    html    latex   example
  movt                              text    html    latex   example
  naMean                            text    html    latex   example
  regmap                            text    html    latex   example
  revish                            text    html    latex   example
  rmAmbigMappings                   text    html    latex   example
  smoothByRegion                    text    html    latex   example
  summarizeByRegion                 text    html    latex   example
  tBinomTest                        text    html    latex   example
  writeGFF3                         text    html    latex   example
** building package indices ...
* DONE (reb)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'reb_1.12.0.tar.gz'