Package: rama

Version: 1.10.0

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD INSTALL --build --library=rama.buildbin-libdir rama_1.10.0.tar.gz

RetCode: 0

Time: 25.2 seconds

Status: OK

PackageFile: rama_1.10.0.zip

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/rama.buildbin-libdir

Using auto-selected zip options 'rama-ZIPDATA=zip'

---------- Making package rama ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making estimation_slice.d from estimation_slice.c
making ex_estimation_slice.d from ex_estimation_slice.c
making mean.sd.d from mean.sd.c
making reorder.d from reorder.c
making util.d from util.c
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c estimation_slice.c -o estimation_slice.o
estimation_slice.c: In function 'mcmc_shift':
estimation_slice.c:122: warning: unused variable 'SSeps_sd_new'
estimation_slice.c:121: warning: unused variable 'SSeps_sd'
estimation_slice.c:117: warning: unused variable 'pi'
estimation_slice.c:116: warning: unused variable 'SS12'
estimation_slice.c:116: warning: unused variable 'SSR2'
estimation_slice.c:116: warning: unused variable 'SSR1'
estimation_slice.c:115: warning: unused variable 'dens_epsilon_new'
estimation_slice.c:115: warning: unused variable 'dens_epsilon'
estimation_slice.c:114: warning: unused variable 'l_epsilon_new'
estimation_slice.c:114: warning: unused variable 'l_epsilon'
estimation_slice.c:113: warning: unused variable 'lambda_eps2_new'
estimation_slice.c:113: warning: unused variable 'lambda_eps1_new'
estimation_slice.c: In function 'slice_sampling_lambda_eps':
estimation_slice.c:484: warning: suggest parentheses around comparison in operand of &
estimation_slice.c:493: warning: suggest parentheses around comparison in operand of &
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c ex_estimation_slice.c -o ex_estimation_slice.o
ex_estimation_slice.c: In function 'mcmc':
ex_estimation_slice.c:144: warning: unused variable 'old_a'
ex_estimation_slice.c:143: warning: unused variable 'old_b'
ex_estimation_slice.c:138: warning: unused variable 'sum_res2'
ex_estimation_slice.c:137: warning: unused variable 'sum_res1'
ex_estimation_slice.c:119: warning: unused variable 'dens_t_new'
ex_estimation_slice.c:119: warning: unused variable 'dens_t'
ex_estimation_slice.c:112: warning: unused variable 'pi'
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c mean.sd.c -o mean.sd.o
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c reorder.c -o reorder.o
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c util.c -o util.o
util.c: In function 'qr_solve':
util.c:570: warning: implicit declaration of function 'dqrdc2_'
util.c:585: warning: implicit declaration of function 'dqrcf_'
util.c:549: warning: unused variable 'vmax'
util.c: In function 'inverse':
util.c:608: warning: unused variable 'j'
util.c: In function 'product_mat_vec':
util.c:655: warning: unused variable 'k'
util.c: In function 'slice_sampling_a':
util.c:752: warning: suggest parentheses around comparison in operand of |
util.c:752: warning: suggest parentheses around comparison in operand of &
util.c:759: warning: suggest parentheses around comparison in operand of &
util.c:766: warning: suggest parentheses around comparison in operand of &
util.c:736: warning: unused variable 'v'
util.c: In function 'slice_sampling_b':
util.c:826: warning: suggest parentheses around comparison in operand of |
util.c:826: warning: suggest parentheses around comparison in operand of &
util.c:833: warning: suggest parentheses around comparison in operand of &
util.c:840: warning: suggest parentheses around comparison in operand of &
util.c:809: warning: unused variable 'v'
util.c: In function 'slice_sampling_b2':
util.c:890: warning: suggest parentheses around comparison in operand of &
util.c:898: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_a2':
util.c:945: warning: suggest parentheses around comparison in operand of &
util.c:953: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_rho':
util.c:999: warning: suggest parentheses around comparison in operand of |
util.c:999: warning: suggest parentheses around comparison in operand of &
util.c:1006: warning: suggest parentheses around comparison in operand of &
util.c:1013: warning: suggest parentheses around comparison in operand of &
util.c:983: warning: unused variable 'v'
util.c: In function 'slice_sampling_rho2':
util.c:1058: warning: suggest parentheses around comparison in operand of &
util.c:1067: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_shift':
util.c:1142: warning: suggest parentheses around comparison in operand of |
util.c:1142: warning: suggest parentheses around comparison in operand of &
util.c:1149: warning: suggest parentheses around comparison in operand of &
util.c:1156: warning: suggest parentheses around comparison in operand of &
util.c:1123: warning: unused variable 'v'
util.c: In function 'slice_sampling_shift2':
util.c:1223: warning: suggest parentheses around comparison in operand of &
util.c:1231: warning: suggest parentheses around comparison in operand of &
util.c:1205: warning: unused variable 'v'
util.c: In function 'slice_sampling_p':
util.c:1371: warning: suggest parentheses around comparison in operand of &
util.c:1379: warning: suggest parentheses around comparison in operand of &
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I E:/biocbld/bbs-2.1-bioc/R/include  -i rama_res.rc -o rama_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o rama.dll rama.def estimation_slice.o ex_estimation_slice.o mean.sd.o reorder.o util.o rama_res.o  -LE:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  zipping data
  installing help
Note: unmatched right brace in 'arrange.row' on or after line 23
Note: unmatched right brace in 'arrange.row' on or after line 27
Note: unmatched right brace in 'arrange.row.Rd' on or after line 23
Note: unmatched right brace in 'arrange.row.Rd' on or after line 27
Note: unmatched right brace in 'est.shift' on or after line 76
Note: unmatched right brace in 'est.shift.Rd' on or after line 76
Note: unmatched right brace in 'fit.model' on or after line 95
Note: unmatched right brace in 'fit.model.Rd' on or after line 95
Note: unmatched right brace in 'ls.effect' on or after line 43
Note: unmatched right brace in 'ls.effect.Rd' on or after line 43
Note: unmatched right brace in 'ratio.plot' on or after line 20
Note: unmatched right brace in 'ratio.plot' on or after line 24
Note: unmatched right brace in 'ratio.plot.Rd' on or after line 20
Note: unmatched right brace in 'ratio.plot.Rd' on or after line 24
Note: unmatched right brace in 'weight.plot' on or after line 26
Note: unmatched right brace in 'weight.plot' on or after line 30
Note: unmatched right brace in 'weight.plot.Rd' on or after line 26
Note: unmatched right brace in 'weight.plot.Rd' on or after line 30
 >>> Building/Updating help pages for package 'rama'
     Formats: text html latex example chm 
  arrange.row                       text    html    latex   example chm
  est.shift                         text    html    latex   example chm
  fit.model                         text    html    latex   example chm
  hiv                               text    html    latex           chm
  is.row.na                         text    html    latex   example chm
  ls.effect                         text    html    latex   example chm
  mat.mean                          text    html    latex   example chm
  ratio.plot                        text    html    latex   example chm
  weight.plot                       text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.5464\rama\chm\rama.chm





Compile time: 0 minutes, 1 second

10	Topics

18	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.5464\rama\chm\rama.chm, 28,441 bytes

Compression decreased file by 9,655 bytes.

  adding MD5 sums

packaged installation of package 'rama' as rama_1.10.0.zip
* DONE (rama)