Package: preprocessCore

Version: 1.0.0

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD INSTALL --build --library=preprocessCore.buildbin-libdir preprocessCore_1.0.0.tar.gz

RetCode: 0

Time: 28.6 seconds

Status: OK

PackageFile: preprocessCore_1.0.0.zip

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/preprocessCore.buildbin-libdir

Using auto-selected zip options ''

---------- Making package preprocessCore ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making R_colSummarize.d from R_colSummarize.c
making R_rlm_interfaces.d from R_rlm_interfaces.c
making R_subColSummarize.d from R_subColSummarize.c
making avg.d from avg.c
making avg_log.d from avg_log.c
making biweight.d from biweight.c
making init_package.d from init_package.c
making lm.d from lm.c
making log_avg.d from log_avg.c
making log_median.d from log_median.c
making matrix_functions.d from matrix_functions.c
making median.d from median.c
making median_log.d from median_log.c
making medianpolish.d from medianpolish.c
making psi_fns.d from psi_fns.c
making qnorm.d from qnorm.c
making rlm.d from rlm.c
making rlm_anova.d from rlm_anova.c
making rlm_se.d from rlm_se.c
making rma_common.d from rma_common.c
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c R_colSummarize.c -o R_colSummarize.o
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c R_rlm_interfaces.c -o R_rlm_interfaces.o
R_rlm_interfaces.c: In function 'R_medianpolish_rma_default_model':
R_rlm_interfaces.c:274: warning: unused variable 'se'
R_rlm_interfaces.c:273: warning: unused variable 'weights'
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c R_subColSummarize.c -o R_subColSummarize.o
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c avg.c -o avg.o
avg.c: In function 'colaverage_no_copy':
avg.c:90: warning: unused variable 'i'
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c avg_log.c -o avg_log.o
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c biweight.c -o biweight.o
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c init_package.c -o init_package.o
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c lm.c -o lm.o
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c log_avg.c -o log_avg.o
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c log_median.c -o log_median.o
log_median.c: In function 'logmedian_no_copy':
log_median.c:138: warning: unused variable 'i'
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c matrix_functions.c -o matrix_functions.o
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c median.c -o median.o
median.c: In function 'colmedian_no_copy':
median.c:146: warning: unused variable 'i'
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c median_log.c -o median_log.o
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c medianpolish.c -o medianpolish.o
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c psi_fns.c -o psi_fns.o
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c qnorm.c -o qnorm.o
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c rlm.c -o rlm.o
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c rlm_anova.c -o rlm_anova.o
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c rlm_se.c -o rlm_se.o
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c rma_common.c -o rma_common.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I E:/biocbld/bbs-2.1-bioc/R/include  -i preprocessCore_res.rc -o preprocessCore_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o preprocessCore.dll preprocessCore.def R_colSummarize.o R_rlm_interfaces.o R_subColSummarize.o avg.o avg_log.o biweight.o init_package.o lm.o log_avg.o log_median.o matrix_functions.o median.o median_log.o medianpolish.o psi_fns.o qnorm.o rlm.o rlm_anova.o rlm_se.o rma_common.o preprocessCore_res.o  -LE:/biocbld/bbs-2.1-bioc/R/bin -lgfortran -LE:/biocbld/bbs-2.1-bioc/R/bin -lRlapack -LE:/biocbld/bbs-2.1-bioc/R/bin -lRblas   -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  preparing package preprocessCore for lazy loading
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'preprocessCore'
     Formats: text html latex example chm 
  colSummarize                      text    html    latex   example chm
  normalize.quantiles               text    html    latex           chm
  normalize.quantiles.in.blocks     text    html    latex   example chm
  normalize.quantiles.robust        text    html    latex           chm
  normalize.quantiles.target        text    html    latex           chm
  rcModels                          text    html    latex   example chm
  subColSummarize                   text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.5592\preprocessCore\chm\preprocessCore.chm





Compile time: 0 minutes, 1 second

8	Topics

39	Local links

6	Internet links

1	Graphic





Created e:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.5592\preprocessCore\chm\preprocessCore.chm, 27,175 bytes

Compression decreased file by 14,220 bytes.

  adding MD5 sums

packaged installation of package 'preprocessCore' as preprocessCore_1.0.0.zip
* DONE (preprocessCore)