BioC 2.1: CHECK report for pcaMethods on lamb1

* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.1-bioc/meat/pcaMethods.Rcheck'
* using R version 2.6.0 (2007-10-03)
* checking for file 'pcaMethods/DESCRIPTION' ... OK
* this is package 'pcaMethods' version '1.14.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'pcaMethods' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
kEstimateFast: no visible binding for global variable 'allVariables'
nni: no visible global function definition for 'exprs'
pca: no visible global function definition for 'exprs'
prep: no visible global function definition for 'exprs'
robustSvd: no visible binding for global variable 'verbose'
svdPca: no visible binding for global variable 'verbose'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating pcaMethods-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating pcaMethods-manual.tex ... OK
* checking pcaMethods-manual.tex ... OK

* Installing *source* package 'pcaMethods' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: MASS
Loading required package: pls

Attaching package: 'pls'


	The following object(s) are masked from package:stats :

	 loadings 

Creating a new generic function for "print" in "pcaMethods"
Creating a new generic function for "summary" in "pcaMethods"
Creating a new generic function for "fitted" in "pcaMethods"
** help
Note: unmatched right brace in 'nlpca' on or after line 60
 >>> Building/Updating help pages for package 'pcaMethods'
     Formats: text html latex example 
  Q2                                text    html    latex   example
  asExprSet                         text    html    latex
  bpca                              text    html    latex   example
  checkData                         text    html    latex
  class.nlpcaNet                    text    html    latex
  class.nniRes                      text    html    latex
  class.pcaRes                      text    html    latex
  fitted.pcaRes                     text    html    latex
  helix                             text    html    latex
  kEstimate                         text    html    latex   example
  kEstimateFast                     text    html    latex   example
  llsImpute                         text    html    latex   example
  metaboliteData                    text    html    latex
  metaboliteDataComplete            text    html    latex
  nipalsPca                         text    html    latex   example
  nlpca                             text    html    latex   example
  nni                               text    html    latex   example
  pca                               text    html    latex   example
  plotPcs                           text    html    latex   example
  plotR2                            text    html    latex
  ppca                              text    html    latex   example
  prep                              text    html    latex   example
  robustPca                         text    html    latex   example
  robustSvd                         text    html    latex   example
  slplot                            text    html    latex   example
  svdImpute                         text    html    latex   example
  svdPca                            text    html    latex   example
** building package indices ...
* DONE (pcaMethods)

Package 157/234	Hostname	OS	Arch	BUILD	CHECK	BUILD BIN
pcaMethods 1.14.0 Wolfram Stacklies Last Changed Date: 2007-10-02 17:41:09 -0700 Last Changed Rev: 27709	lamb1	Linux (SUSE 10.1)	x86_64	OK	[ OK ]
	wellington	Linux (SUSE 9.2)	i686	OK	OK
	liverpool	Windows Server 2003 R2 (32-bit)	x64	OK	OK	OK
	pitt	Mac OS X (10.4.10)	i386	OK	OK	OK

Command output