Package: flowCore

Version: 1.4.0

Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build flowCore

RetCode: 0

Time: 106.5 seconds

Status: OK

PackageFile: flowCore_1.4.0.tar.gz

* checking for file 'flowCore/DESCRIPTION' ... OK
* preparing 'flowCore':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'flowCore' ...
** libs
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c biexponential.c -o biexponential.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c inPolygon.c -o inPolygon.o
gcc -std=gnu99 -shared -L/usr/local/lib -o flowCore.so biexponential.o inPolygon.o   -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: rrcov
Loading required package: robustbase
Scalable Robust Estimators with High Breakdown Point (version 0.4-01)
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Creating a new generic function for "colnames" in "flowCore"
Creating a new generic function for "colnames<-" in "flowCore"
Creating a new generic function for "nrow" in "flowCore"
Creating a new generic function for "ncol" in "flowCore"
** help
 >>> Building/Updating help pages for package 'flowCore'
     Formats: text html latex example 
  GvHD                              text    html    latex
  KmeansFilter                      text    html    latex   example
  Subset-methods                    text    html    latex   example
  arcsinhTransform                  text    html    latex   example
  biexponentialTransform            text    html    latex   example
  coerce                            text    html    latex   example
  compensate                        text    html    latex   example
  concreteFilter-class              text    html    latex
  each_col                          text    html    latex   example
  ellipsoidGate                     text    html    latex   example
  expressionFilter-class            text    html    latex
  filter-and-methods                text    html    latex
  filter-class                      text    html    latex
  filter-in-methods                 text    html    latex   example
  filter-on-methods                 text    html    latex   example
  filter                            text    html    latex   example
  filterDetails-methods             text    html    latex
  filterReference-class             text    html    latex   example
  filterResult-class                text    html    latex   example
  filterSet-class                   text    html    latex   example
  flowFrame-class                   text    html    latex
  flowSet-class                     text    html    latex   example
  flowSet                           text    html    latex
  fsApply                           text    html    latex   example
  identifier                        text    html    latex   example
  keyword-methods                   text    html    latex   example
  linearTransform                   text    html    latex   example
  lnTransform                       text    html    latex   example
  logTransform                      text    html    latex   example
  logicalFilterResult-class         text    html    latex   example
  logicleTransform                  text    html    latex   example
  manyFilterResult-class            text    html    latex   example
  multipleFilterResult-class        text    html    latex   example
  norm2Filter-class                 text    html    latex   example
  parameterFilter-class             text    html    latex
  parameters                        text    html    latex   example
  print.filterSummary               text    html    latex   example
  quadraticTransform                text    html    latex   example
  randomFilterResult-class          text    html    latex
  read.FCS                          text    html    latex   example
  read.FCSheader                    text    html    latex   example
  read.flowSet                      text    html    latex   example
  rectangleGate                     text    html    latex   example
  sampleFilter-class                text    html    latex   example
  sampleFilter                      text    html    latex   example
  scaleTransform                    text    html    latex   example
  setOperationFilter-class          text    html    latex
  spillover-flowSet                 text    html    latex
  splitScaleTransform               text    html    latex   example
  transform-class                   text    html    latex   example
  transformFilter-class             text    html    latex   example
  transformList-class               text    html    latex   example
  transformMap-class                text    html    latex   example
  truncateTransform                 text    html    latex   example
** building package indices ...
* DONE (flowCore)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
WARNING: directory 'flowCore/unitTests/standardsCompliance/Gating-ML_ComplianceTests/ValidGateTests/FCS_Files' is empty
WARNING: directory 'flowCore/unitTests/standardsCompliance/Gating-ML_ComplianceTests/ValidGateTests/RUnitScript_Files' is empty
WARNING: directory 'flowCore/unitTests/standardsCompliance/Transformation-ML_ComplianceTests' is empty
WARNING: directory 'flowCore/unitTests/standardsCompliance/Compensation-ML_ComplianceTests' is empty
WARNING: directory 'flowCore/unitTests/standardsCompliance/FCS_ComplianceTests' is empty
* building 'flowCore_1.4.0.tar.gz'