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Package 55/234HostnameOSArchBUILDCHECKBUILD BIN
cosmo 1.4.0
Oliver Bembom
Last Changed Date: 2007-10-02 17:41:09 -0700
Last Changed Rev: 27709
lamb1 Linux (SUSE 10.1) x86_64  OK  OK 
wellington Linux (SUSE 9.2) i686 [ OK ] OK 
liverpool Windows Server 2003 R2 (32-bit) x64  OK  OK  OK 
pitt Mac OS X (10.4.10) i386  OK  OK  OK 
Package: cosmo
Version: 1.4.0
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build cosmo
RetCode: 0
Time: 97.4 seconds
Status: OK
PackageFile: cosmo_1.4.0.tar.gz

Command output

* checking for file 'cosmo/DESCRIPTION' ... OK
* preparing 'cosmo':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running cleanup
rm: cannot remove `src/*.o': No such file or directory
rm: cannot remove `src/*.so': No such file or directory
rm: cannot remove `Makevars': No such file or directory
* installing the package to re-build vignettes
* Installing *source* package 'cosmo' ...
** libs
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -IINCLUDE -I/usr/local/include    -fpic  -g -O2 -Wall -c alloc.c -o alloc.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -IINCLUDE -I/usr/local/include    -fpic  -g -O2 -Wall -c back.c -o back.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -IINCLUDE -I/usr/local/include    -fpic  -g -O2 -Wall -c constraints.c -o constraints.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -IINCLUDE -I/usr/local/include    -fpic  -g -O2 -Wall -c cosmo.c -o cosmo.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -IINCLUDE -I/usr/local/include    -fpic  -g -O2 -Wall -c cregistration.c -o cregistration.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -IINCLUDE -I/usr/local/include    -fpic  -g -O2 -Wall -c donlp2.c -o donlp2.o
donlp2.c: In function `o8st':
donlp2.c:438: warning: unused variable `k'
donlp2.c:439: warning: unused variable `tol1'
donlp2.c:439: warning: unused variable `bd0'
donlp2.c:439: warning: unused variable `gxi'
donlp2.c:439: warning: unused variable `hxi'
donlp2.c:439: warning: unused variable `term'
donlp2.c: In function `o8opti':
donlp2.c:2055: warning: unused variable `l'
donlp2.c:2068: warning: unused variable `eval_err'
donlp2.c: In function `o8dird':
donlp2.c:4096: warning: unused variable `term1'
donlp2.c:4100: warning: label `L100' defined but not used
donlp2.c: In function `o8eval':
donlp2.c:4387: warning: unused variable `j'
donlp2.c: In function `o8elim':
donlp2.c:5003: warning: unused variable `l'
donlp2.c: In function `o8qpdu':
donlp2.c:5731: warning: unused variable `term2'
donlp2.c:6394: warning: label `L500' defined but not used
donlp2.c: In function `o8dlcd':
donlp2.c:7129: warning: label `L20' defined but not used
donlp2.c: In function `i1_malloc':
donlp2.c:7849: warning: unused variable `j'
donlp2.c: In function `i1_free':
donlp2.c:7886: warning: unused variable `i'
donlp2.c: In function `d1_malloc':
donlp2.c:7979: warning: unused variable `j'
donlp2.c: In function `d1_free':
donlp2.c:8014: warning: unused variable `i'
donlp2.c: In function `l1_malloc':
donlp2.c:8108: warning: unused variable `j'
donlp2.c: In function `l1_free':
donlp2.c:8143: warning: unused variable `i'
donlp2.c: At top level:
INCLUDE/o8gene.h:23: warning: `o8fcount' defined but not used
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -IINCLUDE -I/usr/local/include    -fpic  -g -O2 -Wall -c estarts.c -o estarts.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -IINCLUDE -I/usr/local/include    -fpic  -g -O2 -Wall -c eval.c -o eval.o
eval.c: In function `init_llr_pv_tables':
eval.c:99: warning: unused variable `n'
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -IINCLUDE -I/usr/local/include    -fpic  -g -O2 -Wall -c fit.c -o fit.o
fit.c: In function `getCvPwmRisk':
fit.c:794: warning: `nnSites' might be used uninitialized in this function
fit.c:795: warning: `numSv' might be used uninitialized in this function
fit.c:804: warning: `numSites0' might be used uninitialized in this function
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -IINCLUDE -I/usr/local/include    -fpic  -g -O2 -Wall -c free.c -o free.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -IINCLUDE -I/usr/local/include    -fpic  -g -O2 -Wall -c init.c -o init.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -IINCLUDE -I/usr/local/include    -fpic  -g -O2 -Wall -c io.c -o io.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -IINCLUDE -I/usr/local/include    -fpic  -g -O2 -Wall -c lstarts.c -o lstarts.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -IINCLUDE -I/usr/local/include    -fpic  -g -O2 -Wall -c matLib.c -o matLib.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -IINCLUDE -I/usr/local/include    -fpic  -g -O2 -Wall -c newx.c -o newx.o
newx.c: In function `newx':
INCLUDE/o8fuco.h:5: warning: unused variable `o8val'
INCLUDE/o8fuco.h:5: warning: unused variable `o8llow'
INCLUDE/o8fuco.h:5: warning: unused variable `o8lup'
INCLUDE/o8fuco.h:7: warning: unused variable `o8n'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nr'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nres'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nlin'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nonlin'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nstep'
INCLUDE/o8fuco.h:7: warning: unused variable `o8ndualm'
INCLUDE/o8fuco.h:7: warning: unused variable `o8mdualm'
INCLUDE/o8fuco.h:9: warning: unused variable `o8epsmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8tolmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8deldif'
INCLUDE/o8fuco.h:11: warning: unused variable `o8name'
INCLUDE/o8fuco.h:13: warning: unused variable `o8epsdif'
INCLUDE/o8fuco.h:15: warning: unused variable `o8intakt'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te0'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te1'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te2'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te3'
INCLUDE/o8fuco.h:16: warning: unused variable `o8ident'
INCLUDE/o8fuco.h:16: warning: unused variable `o8eqres'
INCLUDE/o8fuco.h:16: warning: unused variable `o8silent'
INCLUDE/o8fuco.h:16: warning: unused variable `o8analyt'
INCLUDE/o8fuco.h:16: warning: unused variable `o8cold'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icgf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cfincr'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cres'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cgres'
INCLUDE/o8fuco.h:20: warning: unused variable `o8ffuerr'
INCLUDE/o8fuco.h:20: warning: unused variable `o8confuerr'
INCLUDE/o8fuco.h:25: warning: unused variable `o8nh'
INCLUDE/o8fuco.h:25: warning: unused variable `o8ng'
INCLUDE/o8fuco.h:27: warning: unused variable `o8nonlinlist'
INCLUDE/o8fuco.h:29: warning: unused variable `o8gunit'
INCLUDE/o8fuco.h:31: warning: unused variable `o8gconst'
INCLUDE/o8fuco.h:33: warning: unused variable `o8cfuerr'
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -IINCLUDE -I/usr/local/include    -fpic  -g -O2 -Wall -c optimize.c -o optimize.o
optimize.c: In function `user_init_size':
INCLUDE/o8fuco.h:5: warning: unused variable `o8val'
INCLUDE/o8fuco.h:5: warning: unused variable `o8llow'
INCLUDE/o8fuco.h:5: warning: unused variable `o8lup'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nr'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nres'
INCLUDE/o8fuco.h:7: warning: unused variable `o8ndualm'
INCLUDE/o8fuco.h:7: warning: unused variable `o8mdualm'
INCLUDE/o8fuco.h:9: warning: unused variable `o8epsmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8tolmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8deldif'
INCLUDE/o8fuco.h:11: warning: unused variable `o8name'
INCLUDE/o8fuco.h:13: warning: unused variable `o8epsdif'
INCLUDE/o8fuco.h:15: warning: unused variable `o8intakt'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te0'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te1'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te2'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te3'
INCLUDE/o8fuco.h:15: warning: unused variable `o8singul'
INCLUDE/o8fuco.h:16: warning: unused variable `o8ident'
INCLUDE/o8fuco.h:16: warning: unused variable `o8eqres'
INCLUDE/o8fuco.h:16: warning: unused variable `o8silent'
INCLUDE/o8fuco.h:16: warning: unused variable `o8analyt'
INCLUDE/o8fuco.h:16: warning: unused variable `o8cold'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icgf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cfincr'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cres'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cgres'
INCLUDE/o8fuco.h:20: warning: unused variable `o8ffuerr'
INCLUDE/o8fuco.h:20: warning: unused variable `o8confuerr'
INCLUDE/o8fuco.h:25: warning: unused variable `o8nh'
INCLUDE/o8fuco.h:25: warning: unused variable `o8ng'
INCLUDE/o8fuco.h:27: warning: unused variable `o8nonlinlist'
INCLUDE/o8fuco.h:29: warning: unused variable `o8gunit'
INCLUDE/o8fuco.h:31: warning: unused variable `o8gconst'
INCLUDE/o8fuco.h:33: warning: unused variable `o8cfuerr'
INCLUDE/o8fuco.h:38: warning: unused variable `o8numSinguls'
INCLUDE/o8comm.h:12: warning: unused variable `o8runtim'
INCLUDE/o8comm.h:13: warning: unused variable `o8optite'
INCLUDE/o8comm.h:14: warning: unused variable `o8accinf'
INCLUDE/o8comm.h:15: warning: unused variable `o8itstep'
INCLUDE/o8comm.h:15: warning: unused variable `o8phase'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi0'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi1'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsist'
INCLUDE/o8comm.h:17: warning: unused variable `o8psi'
INCLUDE/o8comm.h:17: warning: unused variable `o8psi0'
INCLUDE/o8comm.h:18: warning: unused variable `o8psi1'
INCLUDE/o8comm.h:18: warning: unused variable `o8psist'
INCLUDE/o8comm.h:18: warning: unused variable `o8psimin'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi0'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi1'
INCLUDE/o8comm.h:19: warning: unused variable `o8phimin'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx0'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx1'
INCLUDE/o8comm.h:20: warning: unused variable `o8fxst'
INCLUDE/o8comm.h:20: warning: unused variable `o8fmin'
INCLUDE/o8comm.h:20: warning: unused variable `o8b2n'
INCLUDE/o8comm.h:20: warning: unused variable `o8b2n0'
INCLUDE/o8comm.h:20: warning: unused variable `o8xnorm'
INCLUDE/o8comm.h:20: warning: unused variable `o8x0norm'
INCLUDE/o8comm.h:20: warning: unused variable `o8sig0'
INCLUDE/o8comm.h:20: warning: unused variable `o8dscal'
INCLUDE/o8comm.h:20: warning: unused variable `o8dnorm'
INCLUDE/o8comm.h:20: warning: unused variable `o8d0norm'
INCLUDE/o8comm.h:21: warning: unused variable `o8sig'
INCLUDE/o8comm.h:21: warning: unused variable `o8sigmin'
INCLUDE/o8comm.h:21: warning: unused variable `o8dirder'
INCLUDE/o8comm.h:21: warning: unused variable `o8cosphi'
INCLUDE/o8comm.h:21: warning: unused variable `o8upsim'
INCLUDE/o8comm.h:22: warning: unused variable `o8x'
INCLUDE/o8comm.h:22: warning: unused variable `o8x0'
INCLUDE/o8comm.h:22: warning: unused variable `o8x1'
INCLUDE/o8comm.h:22: warning: unused variable `o8xmin'
INCLUDE/o8comm.h:22: warning: unused variable `o8d'
INCLUDE/o8comm.h:22: warning: unused variable `o8d0'
INCLUDE/o8comm.h:23: warning: unused variable `o8dd'
INCLUDE/o8comm.h:23: warning: unused variable `o8difx'
INCLUDE/o8comm.h:23: warning: unused variable `o8resmin'
INCLUDE/o8comm.h:25: warning: unused variable `o8gradf'
INCLUDE/o8comm.h:25: warning: unused variable `o8gfn'
INCLUDE/o8comm.h:25: warning: unused variable `o8qgf'
INCLUDE/o8comm.h:25: warning: unused variable `o8gphi0'
INCLUDE/o8comm.h:25: warning: unused variable `o8gphi1'
INCLUDE/o8comm.h:26: warning: unused variable `o8gres'
INCLUDE/o8comm.h:26: warning: unused variable `o8gresn'
INCLUDE/o8comm.h:28: warning: unused variable `o8perm'
INCLUDE/o8comm.h:28: warning: unused variable `o8perm1'
INCLUDE/o8comm.h:28: warning: unused variable `o8colno'
INCLUDE/o8comm.h:28: warning: unused variable `o8rank'
INCLUDE/o8comm.h:29: warning: unused variable `o8qr'
INCLUDE/o8comm.h:29: warning: unused variable `o8betaq'
INCLUDE/o8comm.h:29: warning: unused variable `o8diag'
INCLUDE/o8comm.h:30: warning: unused variable `o8cscal'
INCLUDE/o8comm.h:31: warning: unused variable `o8colle'
INCLUDE/o8comm.h:35: warning: unused variable `o8a'
INCLUDE/o8comm.h:35: warning: unused variable `o8scalm'
INCLUDE/o8comm.h:35: warning: unused variable `o8scalm2'
INCLUDE/o8comm.h:35: warning: unused variable `o8diag0'
INCLUDE/o8comm.h:35: warning: unused variable `o8matsc'
INCLUDE/o8comm.h:37: warning: unused variable `o8violis'
INCLUDE/o8comm.h:37: warning: unused variable `o8alist'
INCLUDE/o8comm.h:37: warning: unused variable `o8bind'
INCLUDE/o8comm.h:38: warning: unused variable `o8bind0'
INCLUDE/o8comm.h:38: warning: unused variable `o8aalist'
INCLUDE/o8comm.h:38: warning: unused variable `o8clist'
INCLUDE/o8comm.h:40: warning: unused variable `o8u'
INCLUDE/o8comm.h:40: warning: unused variable `o8u0'
INCLUDE/o8comm.h:41: warning: unused variable `o8w'
INCLUDE/o8comm.h:41: warning: unused variable `o8w1'
INCLUDE/o8comm.h:41: warning: unused variable `o8res'
INCLUDE/o8comm.h:42: warning: unused variable `o8res0'
INCLUDE/o8comm.h:42: warning: unused variable `o8res1'
INCLUDE/o8comm.h:43: warning: unused variable `o8resst'
INCLUDE/o8comm.h:43: warning: unused variable `o8scf'
INCLUDE/o8comm.h:43: warning: unused variable `o8scf0'
INCLUDE/o8comm.h:44: warning: unused variable `o8yu'
INCLUDE/o8comm.h:44: warning: unused variable `o8slack'
INCLUDE/o8comm.h:44: warning: unused variable `o8infeas'
INCLUDE/o8comm.h:44: warning: unused variable `o8work'
INCLUDE/o8comm.h:47: warning: unused variable `o8del'
INCLUDE/o8comm.h:47: warning: unused variable `o8del0'
INCLUDE/o8comm.h:47: warning: unused variable `o8del01'
INCLUDE/o8comm.h:47: warning: unused variable `o8delmin'
INCLUDE/o8comm.h:47: warning: unused variable `o8tau0'
INCLUDE/o8comm.h:47: warning: unused variable `o8tau'
INCLUDE/o8comm.h:47: warning: unused variable `o8ny'
INCLUDE/o8comm.h:48: warning: unused variable `o8smalld'
INCLUDE/o8comm.h:48: warning: unused variable `o8smallw'
INCLUDE/o8comm.h:48: warning: unused variable `o8rho'
INCLUDE/o8comm.h:48: warning: unused variable `o8rho1'
INCLUDE/o8comm.h:48: warning: unused variable `o8eta'
INCLUDE/o8comm.h:48: warning: unused variable `o8epsx'
INCLUDE/o8comm.h:48: warning: unused variable `o8c1d'
INCLUDE/o8comm.h:49: warning: unused variable `o8scfmax'
INCLUDE/o8comm.h:49: warning: unused variable `o8updmy0'
INCLUDE/o8comm.h:49: warning: unused variable `o8tauqp'
INCLUDE/o8comm.h:49: warning: unused variable `o8taufac'
INCLUDE/o8comm.h:49: warning: unused variable `o8taumax'
INCLUDE/o8comm.h:51: warning: unused variable `o8alpha'
INCLUDE/o8comm.h:51: warning: unused variable `o8beta'
INCLUDE/o8comm.h:51: warning: unused variable `o8theta'
INCLUDE/o8comm.h:51: warning: unused variable `o8sigsm'
INCLUDE/o8comm.h:51: warning: unused variable `o8sigla'
INCLUDE/o8comm.h:51: warning: unused variable `o8delta'
INCLUDE/o8comm.h:51: warning: unused variable `o8stptrm'
INCLUDE/o8comm.h:52: warning: unused variable `o8delta1'
INCLUDE/o8comm.h:52: warning: unused variable `o8stmaxl'
INCLUDE/o8comm.h:54: warning: unused variable `o8level'
INCLUDE/o8comm.h:55: warning: unused variable `o8clow'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastdw'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastup'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastch'
INCLUDE/o8comm.h:57: warning: unused variable `o8prou'
INCLUDE/o8comm.h:57: warning: unused variable `o8meu'
INCLUDE/o8comm.h:59: warning: unused variable `o8ug'
INCLUDE/o8comm.h:59: warning: unused variable `o8og'
INCLUDE/o8comm.h:61: warning: unused variable `o8low'
INCLUDE/o8comm.h:61: warning: unused variable `o8up'
INCLUDE/o8comm.h:61: warning: unused variable `o8big'
INCLUDE/o8comm.h:63: warning: unused variable `o8nreset'
INCLUDE/o8comm.h:65: warning: unused variable `o8xst'
INCLUDE/o8comm.h:68: warning: unused variable `o8epsphi'
INCLUDE/o8fint.h:23: warning: unused variable `o8bloc'
INCLUDE/o8fint.h:23: warning: unused variable `o8valid'
INCLUDE/o8fint.h:23: warning: unused variable `o8corr'
INCLUDE/o8fint.h:24: warning: unused variable `o8difftype'
INCLUDE/o8fint.h:25: warning: unused variable `o8xtr'
INCLUDE/o8fint.h:25: warning: unused variable `o8xsc'
INCLUDE/o8fint.h:25: warning: unused variable `o8fu'
INCLUDE/o8fint.h:25: warning: unused variable `o8fugrad'
INCLUDE/o8fint.h:26: warning: unused variable `o8fud'
INCLUDE/o8fint.h:26: warning: unused variable `o8epsfcn'
INCLUDE/o8fint.h:26: warning: unused variable `o8taubnd'
INCLUDE/o8cons.h:4: warning: unused variable `o8zero'
INCLUDE/o8cons.h:4: warning: unused variable `o8one'
INCLUDE/o8cons.h:4: warning: unused variable `o8two'
INCLUDE/o8cons.h:4: warning: unused variable `o8three'
INCLUDE/o8cons.h:4: warning: unused variable `o8four'
INCLUDE/o8cons.h:5: warning: unused variable `o8five'
INCLUDE/o8cons.h:5: warning: unused variable `o8six'
INCLUDE/o8cons.h:5: warning: unused variable `o8seven'
INCLUDE/o8cons.h:6: warning: unused variable `o8twom2'
INCLUDE/o8cons.h:6: warning: unused variable `o8twop4'
INCLUDE/o8cons.h:6: warning: unused variable `o8twop11'
INCLUDE/o8cons.h:6: warning: unused variable `o8onep3'
INCLUDE/o8cons.h:7: warning: unused variable `o8onep5'
INCLUDE/o8cons.h:7: warning: unused variable `o8p2'
INCLUDE/o8cons.h:7: warning: unused variable `o8p4'
INCLUDE/o8cons.h:7: warning: unused variable `o8p5'
INCLUDE/o8cons.h:7: warning: unused variable `o8p7'
INCLUDE/o8cons.h:7: warning: unused variable `o8p8'
INCLUDE/o8cons.h:7: warning: unused variable `o8p9'
INCLUDE/o8cons.h:8: warning: unused variable `o8c45'
INCLUDE/o8cons.h:8: warning: unused variable `o8tm12'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm10'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm9'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm8'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm7'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm6'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm5'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm4'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm3'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm2'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm1'
INCLUDE/o8cons.h:10: warning: unused variable `o8tp1'
INCLUDE/o8cons.h:10: warning: unused variable `o8tp2'
INCLUDE/o8cons.h:11: warning: unused variable `o8tp3'
INCLUDE/o8cons.h:11: warning: unused variable `o8tp4'
optimize.c: In function `user_init':
INCLUDE/o8fuco.h:5: warning: unused variable `o8val'
INCLUDE/o8fuco.h:5: warning: unused variable `o8llow'
INCLUDE/o8fuco.h:5: warning: unused variable `o8lup'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nr'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nres'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nonlin'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nstep'
INCLUDE/o8fuco.h:7: warning: unused variable `o8ndualm'
INCLUDE/o8fuco.h:7: warning: unused variable `o8mdualm'
INCLUDE/o8fuco.h:9: warning: unused variable `o8epsmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8tolmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8deldif'
INCLUDE/o8fuco.h:15: warning: unused variable `o8intakt'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te0'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te1'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te2'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te3'
INCLUDE/o8fuco.h:15: warning: unused variable `o8singul'
INCLUDE/o8fuco.h:16: warning: unused variable `o8ident'
INCLUDE/o8fuco.h:16: warning: unused variable `o8eqres'
INCLUDE/o8fuco.h:16: warning: unused variable `o8cold'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icgf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cfincr'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cres'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cgres'
INCLUDE/o8fuco.h:20: warning: unused variable `o8ffuerr'
INCLUDE/o8fuco.h:20: warning: unused variable `o8confuerr'
INCLUDE/o8fuco.h:25: warning: unused variable `o8nh'
INCLUDE/o8fuco.h:25: warning: unused variable `o8ng'
INCLUDE/o8fuco.h:27: warning: unused variable `o8nonlinlist'
INCLUDE/o8fuco.h:29: warning: unused variable `o8gunit'
INCLUDE/o8fuco.h:31: warning: unused variable `o8gconst'
INCLUDE/o8fuco.h:33: warning: unused variable `o8cfuerr'
INCLUDE/o8fuco.h:38: warning: unused variable `o8numSinguls'
INCLUDE/o8comm.h:12: warning: unused variable `o8runtim'
INCLUDE/o8comm.h:13: warning: unused variable `o8optite'
INCLUDE/o8comm.h:14: warning: unused variable `o8accinf'
INCLUDE/o8comm.h:15: warning: unused variable `o8itstep'
INCLUDE/o8comm.h:15: warning: unused variable `o8phase'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi0'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi1'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsist'
INCLUDE/o8comm.h:17: warning: unused variable `o8psi'
INCLUDE/o8comm.h:17: warning: unused variable `o8psi0'
INCLUDE/o8comm.h:18: warning: unused variable `o8psi1'
INCLUDE/o8comm.h:18: warning: unused variable `o8psist'
INCLUDE/o8comm.h:18: warning: unused variable `o8psimin'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi0'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi1'
INCLUDE/o8comm.h:19: warning: unused variable `o8phimin'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx0'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx1'
INCLUDE/o8comm.h:20: warning: unused variable `o8fxst'
INCLUDE/o8comm.h:20: warning: unused variable `o8fmin'
INCLUDE/o8comm.h:20: warning: unused variable `o8b2n'
INCLUDE/o8comm.h:20: warning: unused variable `o8b2n0'
INCLUDE/o8comm.h:20: warning: unused variable `o8xnorm'
INCLUDE/o8comm.h:20: warning: unused variable `o8x0norm'
INCLUDE/o8comm.h:20: warning: unused variable `o8sig0'
INCLUDE/o8comm.h:20: warning: unused variable `o8dscal'
INCLUDE/o8comm.h:20: warning: unused variable `o8dnorm'
INCLUDE/o8comm.h:20: warning: unused variable `o8d0norm'
INCLUDE/o8comm.h:21: warning: unused variable `o8sig'
INCLUDE/o8comm.h:21: warning: unused variable `o8sigmin'
INCLUDE/o8comm.h:21: warning: unused variable `o8dirder'
INCLUDE/o8comm.h:21: warning: unused variable `o8cosphi'
INCLUDE/o8comm.h:21: warning: unused variable `o8upsim'
INCLUDE/o8comm.h:22: warning: unused variable `o8x0'
INCLUDE/o8comm.h:22: warning: unused variable `o8x1'
INCLUDE/o8comm.h:22: warning: unused variable `o8xmin'
INCLUDE/o8comm.h:22: warning: unused variable `o8d'
INCLUDE/o8comm.h:22: warning: unused variable `o8d0'
INCLUDE/o8comm.h:23: warning: unused variable `o8dd'
INCLUDE/o8comm.h:23: warning: unused variable `o8difx'
INCLUDE/o8comm.h:23: warning: unused variable `o8resmin'
INCLUDE/o8comm.h:25: warning: unused variable `o8gradf'
INCLUDE/o8comm.h:25: warning: unused variable `o8gfn'
INCLUDE/o8comm.h:25: warning: unused variable `o8qgf'
INCLUDE/o8comm.h:25: warning: unused variable `o8gphi0'
INCLUDE/o8comm.h:25: warning: unused variable `o8gphi1'
INCLUDE/o8comm.h:26: warning: unused variable `o8gresn'
INCLUDE/o8comm.h:28: warning: unused variable `o8perm'
INCLUDE/o8comm.h:28: warning: unused variable `o8perm1'
INCLUDE/o8comm.h:28: warning: unused variable `o8colno'
INCLUDE/o8comm.h:28: warning: unused variable `o8rank'
INCLUDE/o8comm.h:29: warning: unused variable `o8qr'
INCLUDE/o8comm.h:29: warning: unused variable `o8betaq'
INCLUDE/o8comm.h:29: warning: unused variable `o8diag'
INCLUDE/o8comm.h:30: warning: unused variable `o8cscal'
INCLUDE/o8comm.h:31: warning: unused variable `o8colle'
INCLUDE/o8comm.h:35: warning: unused variable `o8a'
INCLUDE/o8comm.h:35: warning: unused variable `o8scalm'
INCLUDE/o8comm.h:35: warning: unused variable `o8scalm2'
INCLUDE/o8comm.h:35: warning: unused variable `o8diag0'
INCLUDE/o8comm.h:35: warning: unused variable `o8matsc'
INCLUDE/o8comm.h:37: warning: unused variable `o8violis'
INCLUDE/o8comm.h:37: warning: unused variable `o8alist'
INCLUDE/o8comm.h:37: warning: unused variable `o8bind'
INCLUDE/o8comm.h:38: warning: unused variable `o8bind0'
INCLUDE/o8comm.h:38: warning: unused variable `o8aalist'
INCLUDE/o8comm.h:38: warning: unused variable `o8clist'
INCLUDE/o8comm.h:40: warning: unused variable `o8u'
INCLUDE/o8comm.h:40: warning: unused variable `o8u0'
INCLUDE/o8comm.h:41: warning: unused variable `o8w'
INCLUDE/o8comm.h:41: warning: unused variable `o8w1'
INCLUDE/o8comm.h:41: warning: unused variable `o8res'
INCLUDE/o8comm.h:42: warning: unused variable `o8res0'
INCLUDE/o8comm.h:42: warning: unused variable `o8res1'
INCLUDE/o8comm.h:43: warning: unused variable `o8resst'
INCLUDE/o8comm.h:43: warning: unused variable `o8scf'
INCLUDE/o8comm.h:43: warning: unused variable `o8scf0'
INCLUDE/o8comm.h:44: warning: unused variable `o8yu'
INCLUDE/o8comm.h:44: warning: unused variable `o8slack'
INCLUDE/o8comm.h:44: warning: unused variable `o8infeas'
INCLUDE/o8comm.h:44: warning: unused variable `o8work'
INCLUDE/o8comm.h:46: warning: unused variable `o8iterma'
INCLUDE/o8comm.h:47: warning: unused variable `o8del'
INCLUDE/o8comm.h:47: warning: unused variable `o8del01'
INCLUDE/o8comm.h:47: warning: unused variable `o8delmin'
INCLUDE/o8comm.h:47: warning: unused variable `o8ny'
INCLUDE/o8comm.h:48: warning: unused variable `o8smalld'
INCLUDE/o8comm.h:48: warning: unused variable `o8smallw'
INCLUDE/o8comm.h:48: warning: unused variable `o8rho'
INCLUDE/o8comm.h:48: warning: unused variable `o8rho1'
INCLUDE/o8comm.h:48: warning: unused variable `o8eta'
INCLUDE/o8comm.h:48: warning: unused variable `o8epsx'
INCLUDE/o8comm.h:48: warning: unused variable `o8c1d'
INCLUDE/o8comm.h:49: warning: unused variable `o8scfmax'
INCLUDE/o8comm.h:49: warning: unused variable `o8updmy0'
INCLUDE/o8comm.h:49: warning: unused variable `o8tauqp'
INCLUDE/o8comm.h:49: warning: unused variable `o8taufac'
INCLUDE/o8comm.h:49: warning: unused variable `o8taumax'
INCLUDE/o8comm.h:51: warning: unused variable `o8alpha'
INCLUDE/o8comm.h:51: warning: unused variable `o8beta'
INCLUDE/o8comm.h:51: warning: unused variable `o8theta'
INCLUDE/o8comm.h:51: warning: unused variable `o8sigsm'
INCLUDE/o8comm.h:51: warning: unused variable `o8sigla'
INCLUDE/o8comm.h:51: warning: unused variable `o8delta'
INCLUDE/o8comm.h:51: warning: unused variable `o8stptrm'
INCLUDE/o8comm.h:52: warning: unused variable `o8delta1'
INCLUDE/o8comm.h:52: warning: unused variable `o8stmaxl'
INCLUDE/o8comm.h:54: warning: unused variable `o8level'
INCLUDE/o8comm.h:55: warning: unused variable `o8clow'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastdw'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastup'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastch'
INCLUDE/o8comm.h:57: warning: unused variable `o8prou'
INCLUDE/o8comm.h:57: warning: unused variable `o8meu'
INCLUDE/o8comm.h:59: warning: unused variable `o8ug'
INCLUDE/o8comm.h:59: warning: unused variable `o8og'
INCLUDE/o8comm.h:65: warning: unused variable `o8xst'
INCLUDE/o8comm.h:68: warning: unused variable `o8epsphi'
INCLUDE/o8fint.h:23: warning: unused variable `o8bloc'
INCLUDE/o8fint.h:23: warning: unused variable `o8valid'
INCLUDE/o8fint.h:23: warning: unused variable `o8corr'
INCLUDE/o8fint.h:25: warning: unused variable `o8xtr'
INCLUDE/o8fint.h:25: warning: unused variable `o8xsc'
INCLUDE/o8fint.h:25: warning: unused variable `o8fu'
INCLUDE/o8fint.h:25: warning: unused variable `o8fugrad'
INCLUDE/o8fint.h:26: warning: unused variable `o8fud'
INCLUDE/o8cons.h:4: warning: unused variable `o8zero'
INCLUDE/o8cons.h:4: warning: unused variable `o8one'
INCLUDE/o8cons.h:4: warning: unused variable `o8two'
INCLUDE/o8cons.h:4: warning: unused variable `o8three'
INCLUDE/o8cons.h:4: warning: unused variable `o8four'
INCLUDE/o8cons.h:5: warning: unused variable `o8five'
INCLUDE/o8cons.h:5: warning: unused variable `o8six'
INCLUDE/o8cons.h:5: warning: unused variable `o8seven'
INCLUDE/o8cons.h:6: warning: unused variable `o8twom2'
INCLUDE/o8cons.h:6: warning: unused variable `o8twop4'
INCLUDE/o8cons.h:6: warning: unused variable `o8twop11'
INCLUDE/o8cons.h:6: warning: unused variable `o8onep3'
INCLUDE/o8cons.h:7: warning: unused variable `o8onep5'
INCLUDE/o8cons.h:7: warning: unused variable `o8p2'
INCLUDE/o8cons.h:7: warning: unused variable `o8p4'
INCLUDE/o8cons.h:7: warning: unused variable `o8p5'
INCLUDE/o8cons.h:7: warning: unused variable `o8p7'
INCLUDE/o8cons.h:7: warning: unused variable `o8p8'
INCLUDE/o8cons.h:7: warning: unused variable `o8p9'
INCLUDE/o8cons.h:8: warning: unused variable `o8c45'
INCLUDE/o8cons.h:8: warning: unused variable `o8tm12'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm10'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm9'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm8'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm7'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm6'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm5'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm4'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm3'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm2'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm1'
INCLUDE/o8cons.h:10: warning: unused variable `o8tp1'
INCLUDE/o8cons.h:10: warning: unused variable `o8tp2'
INCLUDE/o8cons.h:11: warning: unused variable `o8tp3'
INCLUDE/o8cons.h:11: warning: unused variable `o8tp4'
optimize.c: In function `setup':
INCLUDE/o8fuco.h:5: warning: unused variable `o8val'
INCLUDE/o8fuco.h:5: warning: unused variable `o8llow'
INCLUDE/o8fuco.h:5: warning: unused variable `o8lup'
INCLUDE/o8fuco.h:7: warning: unused variable `o8n'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nr'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nres'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nlin'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nonlin'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nstep'
INCLUDE/o8fuco.h:7: warning: unused variable `o8ndualm'
INCLUDE/o8fuco.h:7: warning: unused variable `o8mdualm'
INCLUDE/o8fuco.h:9: warning: unused variable `o8epsmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8tolmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8deldif'
INCLUDE/o8fuco.h:11: warning: unused variable `o8name'
INCLUDE/o8fuco.h:13: warning: unused variable `o8epsdif'
INCLUDE/o8fuco.h:15: warning: unused variable `o8intakt'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te1'
INCLUDE/o8fuco.h:15: warning: unused variable `o8singul'
INCLUDE/o8fuco.h:16: warning: unused variable `o8ident'
INCLUDE/o8fuco.h:16: warning: unused variable `o8eqres'
INCLUDE/o8fuco.h:16: warning: unused variable `o8silent'
INCLUDE/o8fuco.h:16: warning: unused variable `o8analyt'
INCLUDE/o8fuco.h:16: warning: unused variable `o8cold'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icgf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cfincr'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cres'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cgres'
INCLUDE/o8fuco.h:20: warning: unused variable `o8ffuerr'
INCLUDE/o8fuco.h:20: warning: unused variable `o8confuerr'
INCLUDE/o8fuco.h:25: warning: unused variable `o8nh'
INCLUDE/o8fuco.h:25: warning: unused variable `o8ng'
INCLUDE/o8fuco.h:27: warning: unused variable `o8nonlinlist'
INCLUDE/o8fuco.h:29: warning: unused variable `o8gunit'
INCLUDE/o8fuco.h:31: warning: unused variable `o8gconst'
INCLUDE/o8fuco.h:33: warning: unused variable `o8cfuerr'
INCLUDE/o8comm.h:12: warning: unused variable `o8runtim'
INCLUDE/o8comm.h:13: warning: unused variable `o8optite'
INCLUDE/o8comm.h:14: warning: unused variable `o8accinf'
INCLUDE/o8comm.h:15: warning: unused variable `o8itstep'
INCLUDE/o8comm.h:15: warning: unused variable `o8phase'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi0'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi1'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsist'
INCLUDE/o8comm.h:17: warning: unused variable `o8psi'
INCLUDE/o8comm.h:17: warning: unused variable `o8psi0'
INCLUDE/o8comm.h:18: warning: unused variable `o8psi1'
INCLUDE/o8comm.h:18: warning: unused variable `o8psist'
INCLUDE/o8comm.h:18: warning: unused variable `o8psimin'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi0'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi1'
INCLUDE/o8comm.h:19: warning: unused variable `o8phimin'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx0'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx1'
INCLUDE/o8comm.h:20: warning: unused variable `o8fxst'
INCLUDE/o8comm.h:20: warning: unused variable `o8fmin'
INCLUDE/o8comm.h:20: warning: unused variable `o8b2n'
INCLUDE/o8comm.h:20: warning: unused variable `o8b2n0'
INCLUDE/o8comm.h:20: warning: unused variable `o8xnorm'
INCLUDE/o8comm.h:20: warning: unused variable `o8x0norm'
INCLUDE/o8comm.h:20: warning: unused variable `o8sig0'
INCLUDE/o8comm.h:20: warning: unused variable `o8dscal'
INCLUDE/o8comm.h:20: warning: unused variable `o8dnorm'
INCLUDE/o8comm.h:20: warning: unused variable `o8d0norm'
INCLUDE/o8comm.h:21: warning: unused variable `o8sig'
INCLUDE/o8comm.h:21: warning: unused variable `o8sigmin'
INCLUDE/o8comm.h:21: warning: unused variable `o8dirder'
INCLUDE/o8comm.h:21: warning: unused variable `o8cosphi'
INCLUDE/o8comm.h:21: warning: unused variable `o8upsim'
INCLUDE/o8comm.h:22: warning: unused variable `o8x'
INCLUDE/o8comm.h:22: warning: unused variable `o8x0'
INCLUDE/o8comm.h:22: warning: unused variable `o8x1'
INCLUDE/o8comm.h:22: warning: unused variable `o8xmin'
INCLUDE/o8comm.h:22: warning: unused variable `o8d'
INCLUDE/o8comm.h:22: warning: unused variable `o8d0'
INCLUDE/o8comm.h:23: warning: unused variable `o8dd'
INCLUDE/o8comm.h:23: warning: unused variable `o8difx'
INCLUDE/o8comm.h:23: warning: unused variable `o8resmin'
INCLUDE/o8comm.h:25: warning: unused variable `o8gradf'
INCLUDE/o8comm.h:25: warning: unused variable `o8gfn'
INCLUDE/o8comm.h:25: warning: unused variable `o8qgf'
INCLUDE/o8comm.h:25: warning: unused variable `o8gphi0'
INCLUDE/o8comm.h:25: warning: unused variable `o8gphi1'
INCLUDE/o8comm.h:26: warning: unused variable `o8gres'
INCLUDE/o8comm.h:26: warning: unused variable `o8gresn'
INCLUDE/o8comm.h:28: warning: unused variable `o8perm'
INCLUDE/o8comm.h:28: warning: unused variable `o8perm1'
INCLUDE/o8comm.h:28: warning: unused variable `o8colno'
INCLUDE/o8comm.h:28: warning: unused variable `o8rank'
INCLUDE/o8comm.h:29: warning: unused variable `o8qr'
INCLUDE/o8comm.h:29: warning: unused variable `o8betaq'
INCLUDE/o8comm.h:29: warning: unused variable `o8diag'
INCLUDE/o8comm.h:30: warning: unused variable `o8cscal'
INCLUDE/o8comm.h:31: warning: unused variable `o8colle'
INCLUDE/o8comm.h:35: warning: unused variable `o8a'
INCLUDE/o8comm.h:35: warning: unused variable `o8scalm'
INCLUDE/o8comm.h:35: warning: unused variable `o8scalm2'
INCLUDE/o8comm.h:35: warning: unused variable `o8diag0'
INCLUDE/o8comm.h:35: warning: unused variable `o8matsc'
INCLUDE/o8comm.h:37: warning: unused variable `o8violis'
INCLUDE/o8comm.h:37: warning: unused variable `o8alist'
INCLUDE/o8comm.h:37: warning: unused variable `o8bind'
INCLUDE/o8comm.h:38: warning: unused variable `o8bind0'
INCLUDE/o8comm.h:38: warning: unused variable `o8aalist'
INCLUDE/o8comm.h:38: warning: unused variable `o8clist'
INCLUDE/o8comm.h:40: warning: unused variable `o8u'
INCLUDE/o8comm.h:40: warning: unused variable `o8u0'
INCLUDE/o8comm.h:41: warning: unused variable `o8w'
INCLUDE/o8comm.h:41: warning: unused variable `o8w1'
INCLUDE/o8comm.h:41: warning: unused variable `o8res'
INCLUDE/o8comm.h:42: warning: unused variable `o8res0'
INCLUDE/o8comm.h:42: warning: unused variable `o8res1'
INCLUDE/o8comm.h:43: warning: unused variable `o8resst'
INCLUDE/o8comm.h:43: warning: unused variable `o8scf'
INCLUDE/o8comm.h:43: warning: unused variable `o8scf0'
INCLUDE/o8comm.h:44: warning: unused variable `o8yu'
INCLUDE/o8comm.h:44: warning: unused variable `o8slack'
INCLUDE/o8comm.h:44: warning: unused variable `o8infeas'
INCLUDE/o8comm.h:44: warning: unused variable `o8work'
INCLUDE/o8comm.h:46: warning: unused variable `o8iterma'
INCLUDE/o8comm.h:47: warning: unused variable `o8del'
INCLUDE/o8comm.h:47: warning: unused variable `o8del0'
INCLUDE/o8comm.h:47: warning: unused variable `o8del01'
INCLUDE/o8comm.h:47: warning: unused variable `o8delmin'
INCLUDE/o8comm.h:47: warning: unused variable `o8tau0'
INCLUDE/o8comm.h:47: warning: unused variable `o8tau'
INCLUDE/o8comm.h:47: warning: unused variable `o8ny'
INCLUDE/o8comm.h:48: warning: unused variable `o8smalld'
INCLUDE/o8comm.h:48: warning: unused variable `o8smallw'
INCLUDE/o8comm.h:48: warning: unused variable `o8rho'
INCLUDE/o8comm.h:48: warning: unused variable `o8rho1'
INCLUDE/o8comm.h:48: warning: unused variable `o8eta'
INCLUDE/o8comm.h:48: warning: unused variable `o8epsx'
INCLUDE/o8comm.h:48: warning: unused variable `o8c1d'
INCLUDE/o8comm.h:49: warning: unused variable `o8scfmax'
INCLUDE/o8comm.h:49: warning: unused variable `o8updmy0'
INCLUDE/o8comm.h:49: warning: unused variable `o8tauqp'
INCLUDE/o8comm.h:49: warning: unused variable `o8taufac'
INCLUDE/o8comm.h:49: warning: unused variable `o8taumax'
INCLUDE/o8comm.h:51: warning: unused variable `o8alpha'
INCLUDE/o8comm.h:51: warning: unused variable `o8beta'
INCLUDE/o8comm.h:51: warning: unused variable `o8theta'
INCLUDE/o8comm.h:51: warning: unused variable `o8sigsm'
INCLUDE/o8comm.h:51: warning: unused variable `o8sigla'
INCLUDE/o8comm.h:51: warning: unused variable `o8delta'
INCLUDE/o8comm.h:51: warning: unused variable `o8stptrm'
INCLUDE/o8comm.h:52: warning: unused variable `o8delta1'
INCLUDE/o8comm.h:52: warning: unused variable `o8stmaxl'
INCLUDE/o8comm.h:54: warning: unused variable `o8level'
INCLUDE/o8comm.h:55: warning: unused variable `o8clow'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastdw'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastup'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastch'
INCLUDE/o8comm.h:57: warning: unused variable `o8prou'
INCLUDE/o8comm.h:57: warning: unused variable `o8meu'
INCLUDE/o8comm.h:59: warning: unused variable `o8ug'
INCLUDE/o8comm.h:59: warning: unused variable `o8og'
INCLUDE/o8comm.h:61: warning: unused variable `o8low'
INCLUDE/o8comm.h:61: warning: unused variable `o8up'
INCLUDE/o8comm.h:61: warning: unused variable `o8big'
INCLUDE/o8comm.h:63: warning: unused variable `o8nreset'
INCLUDE/o8comm.h:65: warning: unused variable `o8xst'
INCLUDE/o8comm.h:68: warning: unused variable `o8epsphi'
optimize.c: In function `solchk':
INCLUDE/o8fuco.h:5: warning: unused variable `o8val'
INCLUDE/o8fuco.h:5: warning: unused variable `o8llow'
INCLUDE/o8fuco.h:5: warning: unused variable `o8lup'
INCLUDE/o8fuco.h:7: warning: unused variable `o8n'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nr'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nres'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nlin'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nonlin'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nstep'
INCLUDE/o8fuco.h:7: warning: unused variable `o8ndualm'
INCLUDE/o8fuco.h:7: warning: unused variable `o8mdualm'
INCLUDE/o8fuco.h:9: warning: unused variable `o8epsmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8tolmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8deldif'
INCLUDE/o8fuco.h:11: warning: unused variable `o8name'
INCLUDE/o8fuco.h:13: warning: unused variable `o8epsdif'
INCLUDE/o8fuco.h:15: warning: unused variable `o8intakt'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te0'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te1'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te2'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te3'
INCLUDE/o8fuco.h:15: warning: unused variable `o8singul'
INCLUDE/o8fuco.h:16: warning: unused variable `o8ident'
INCLUDE/o8fuco.h:16: warning: unused variable `o8eqres'
INCLUDE/o8fuco.h:16: warning: unused variable `o8silent'
INCLUDE/o8fuco.h:16: warning: unused variable `o8analyt'
INCLUDE/o8fuco.h:16: warning: unused variable `o8cold'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icgf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cfincr'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cres'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cgres'
INCLUDE/o8fuco.h:20: warning: unused variable `o8ffuerr'
INCLUDE/o8fuco.h:20: warning: unused variable `o8confuerr'
INCLUDE/o8fuco.h:25: warning: unused variable `o8nh'
INCLUDE/o8fuco.h:25: warning: unused variable `o8ng'
INCLUDE/o8fuco.h:27: warning: unused variable `o8nonlinlist'
INCLUDE/o8fuco.h:29: warning: unused variable `o8gunit'
INCLUDE/o8fuco.h:31: warning: unused variable `o8gconst'
INCLUDE/o8fuco.h:33: warning: unused variable `o8cfuerr'
INCLUDE/o8fuco.h:38: warning: unused variable `o8numSinguls'
INCLUDE/o8comm.h:12: warning: unused variable `o8runtim'
INCLUDE/o8comm.h:14: warning: unused variable `o8accinf'
INCLUDE/o8comm.h:15: warning: unused variable `o8phase'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi0'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi1'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsist'
INCLUDE/o8comm.h:17: warning: unused variable `o8psi'
INCLUDE/o8comm.h:17: warning: unused variable `o8psi0'
INCLUDE/o8comm.h:18: warning: unused variable `o8psi1'
INCLUDE/o8comm.h:18: warning: unused variable `o8psist'
INCLUDE/o8comm.h:18: warning: unused variable `o8psimin'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi0'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi1'
INCLUDE/o8comm.h:19: warning: unused variable `o8phimin'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx0'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx1'
INCLUDE/o8comm.h:20: warning: unused variable `o8fxst'
INCLUDE/o8comm.h:20: warning: unused variable `o8fmin'
INCLUDE/o8comm.h:20: warning: unused variable `o8b2n'
INCLUDE/o8comm.h:20: warning: unused variable `o8b2n0'
INCLUDE/o8comm.h:20: warning: unused variable `o8xnorm'
INCLUDE/o8comm.h:20: warning: unused variable `o8x0norm'
INCLUDE/o8comm.h:20: warning: unused variable `o8sig0'
INCLUDE/o8comm.h:20: warning: unused variable `o8dscal'
INCLUDE/o8comm.h:20: warning: unused variable `o8dnorm'
INCLUDE/o8comm.h:20: warning: unused variable `o8d0norm'
INCLUDE/o8comm.h:21: warning: unused variable `o8sig'
INCLUDE/o8comm.h:21: warning: unused variable `o8sigmin'
INCLUDE/o8comm.h:21: warning: unused variable `o8dirder'
INCLUDE/o8comm.h:21: warning: unused variable `o8cosphi'
INCLUDE/o8comm.h:21: warning: unused variable `o8upsim'
INCLUDE/o8comm.h:22: warning: unused variable `o8x0'
INCLUDE/o8comm.h:22: warning: unused variable `o8x1'
INCLUDE/o8comm.h:22: warning: unused variable `o8xmin'
INCLUDE/o8comm.h:22: warning: unused variable `o8d'
INCLUDE/o8comm.h:22: warning: unused variable `o8d0'
INCLUDE/o8comm.h:23: warning: unused variable `o8dd'
INCLUDE/o8comm.h:23: warning: unused variable `o8difx'
INCLUDE/o8comm.h:23: warning: unused variable `o8resmin'
INCLUDE/o8comm.h:25: warning: unused variable `o8gradf'
INCLUDE/o8comm.h:25: warning: unused variable `o8gfn'
INCLUDE/o8comm.h:25: warning: unused variable `o8qgf'
INCLUDE/o8comm.h:25: warning: unused variable `o8gphi0'
INCLUDE/o8comm.h:25: warning: unused variable `o8gphi1'
INCLUDE/o8comm.h:26: warning: unused variable `o8gres'
INCLUDE/o8comm.h:26: warning: unused variable `o8gresn'
INCLUDE/o8comm.h:28: warning: unused variable `o8perm'
INCLUDE/o8comm.h:28: warning: unused variable `o8perm1'
INCLUDE/o8comm.h:28: warning: unused variable `o8colno'
INCLUDE/o8comm.h:28: warning: unused variable `o8rank'
INCLUDE/o8comm.h:29: warning: unused variable `o8qr'
INCLUDE/o8comm.h:29: warning: unused variable `o8betaq'
INCLUDE/o8comm.h:29: warning: unused variable `o8diag'
INCLUDE/o8comm.h:30: warning: unused variable `o8cscal'
INCLUDE/o8comm.h:31: warning: unused variable `o8colle'
INCLUDE/o8comm.h:35: warning: unused variable `o8a'
INCLUDE/o8comm.h:35: warning: unused variable `o8scalm'
INCLUDE/o8comm.h:35: warning: unused variable `o8scalm2'
INCLUDE/o8comm.h:35: warning: unused variable `o8diag0'
INCLUDE/o8comm.h:35: warning: unused variable `o8matsc'
INCLUDE/o8comm.h:37: warning: unused variable `o8violis'
INCLUDE/o8comm.h:37: warning: unused variable `o8alist'
INCLUDE/o8comm.h:37: warning: unused variable `o8bind'
INCLUDE/o8comm.h:38: warning: unused variable `o8bind0'
INCLUDE/o8comm.h:38: warning: unused variable `o8aalist'
INCLUDE/o8comm.h:38: warning: unused variable `o8clist'
INCLUDE/o8comm.h:40: warning: unused variable `o8u'
INCLUDE/o8comm.h:40: warning: unused variable `o8u0'
INCLUDE/o8comm.h:41: warning: unused variable `o8w'
INCLUDE/o8comm.h:41: warning: unused variable `o8w1'
INCLUDE/o8comm.h:41: warning: unused variable `o8res'
INCLUDE/o8comm.h:42: warning: unused variable `o8res0'
INCLUDE/o8comm.h:42: warning: unused variable `o8res1'
INCLUDE/o8comm.h:43: warning: unused variable `o8resst'
INCLUDE/o8comm.h:43: warning: unused variable `o8scf'
INCLUDE/o8comm.h:43: warning: unused variable `o8scf0'
INCLUDE/o8comm.h:44: warning: unused variable `o8yu'
INCLUDE/o8comm.h:44: warning: unused variable `o8slack'
INCLUDE/o8comm.h:44: warning: unused variable `o8infeas'
INCLUDE/o8comm.h:44: warning: unused variable `o8work'
INCLUDE/o8comm.h:46: warning: unused variable `o8iterma'
INCLUDE/o8comm.h:47: warning: unused variable `o8del'
INCLUDE/o8comm.h:47: warning: unused variable `o8del0'
INCLUDE/o8comm.h:47: warning: unused variable `o8del01'
INCLUDE/o8comm.h:47: warning: unused variable `o8delmin'
INCLUDE/o8comm.h:47: warning: unused variable `o8tau0'
INCLUDE/o8comm.h:47: warning: unused variable `o8tau'
INCLUDE/o8comm.h:47: warning: unused variable `o8ny'
INCLUDE/o8comm.h:48: warning: unused variable `o8smalld'
INCLUDE/o8comm.h:48: warning: unused variable `o8smallw'
INCLUDE/o8comm.h:48: warning: unused variable `o8rho'
INCLUDE/o8comm.h:48: warning: unused variable `o8rho1'
INCLUDE/o8comm.h:48: warning: unused variable `o8eta'
INCLUDE/o8comm.h:48: warning: unused variable `o8epsx'
INCLUDE/o8comm.h:48: warning: unused variable `o8c1d'
INCLUDE/o8comm.h:49: warning: unused variable `o8scfmax'
INCLUDE/o8comm.h:49: warning: unused variable `o8updmy0'
INCLUDE/o8comm.h:49: warning: unused variable `o8tauqp'
INCLUDE/o8comm.h:49: warning: unused variable `o8taufac'
INCLUDE/o8comm.h:49: warning: unused variable `o8taumax'
INCLUDE/o8comm.h:51: warning: unused variable `o8alpha'
INCLUDE/o8comm.h:51: warning: unused variable `o8beta'
INCLUDE/o8comm.h:51: warning: unused variable `o8theta'
INCLUDE/o8comm.h:51: warning: unused variable `o8sigsm'
INCLUDE/o8comm.h:51: warning: unused variable `o8sigla'
INCLUDE/o8comm.h:51: warning: unused variable `o8delta'
INCLUDE/o8comm.h:51: warning: unused variable `o8stptrm'
INCLUDE/o8comm.h:52: warning: unused variable `o8delta1'
INCLUDE/o8comm.h:52: warning: unused variable `o8stmaxl'
INCLUDE/o8comm.h:54: warning: unused variable `o8level'
INCLUDE/o8comm.h:55: warning: unused variable `o8clow'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastdw'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastup'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastch'
INCLUDE/o8comm.h:57: warning: unused variable `o8prou'
INCLUDE/o8comm.h:57: warning: unused variable `o8meu'
INCLUDE/o8comm.h:59: warning: unused variable `o8ug'
INCLUDE/o8comm.h:59: warning: unused variable `o8og'
INCLUDE/o8comm.h:61: warning: unused variable `o8low'
INCLUDE/o8comm.h:61: warning: unused variable `o8up'
INCLUDE/o8comm.h:61: warning: unused variable `o8big'
INCLUDE/o8comm.h:63: warning: unused variable `o8nreset'
INCLUDE/o8comm.h:65: warning: unused variable `o8xst'
INCLUDE/o8comm.h:68: warning: unused variable `o8epsphi'
INCLUDE/o8cons.h:4: warning: unused variable `o8zero'
INCLUDE/o8cons.h:4: warning: unused variable `o8one'
INCLUDE/o8cons.h:4: warning: unused variable `o8two'
INCLUDE/o8cons.h:4: warning: unused variable `o8three'
INCLUDE/o8cons.h:4: warning: unused variable `o8four'
INCLUDE/o8cons.h:5: warning: unused variable `o8five'
INCLUDE/o8cons.h:5: warning: unused variable `o8six'
INCLUDE/o8cons.h:5: warning: unused variable `o8seven'
INCLUDE/o8cons.h:6: warning: unused variable `o8twom2'
INCLUDE/o8cons.h:6: warning: unused variable `o8twop4'
INCLUDE/o8cons.h:6: warning: unused variable `o8twop11'
INCLUDE/o8cons.h:6: warning: unused variable `o8onep3'
INCLUDE/o8cons.h:7: warning: unused variable `o8onep5'
INCLUDE/o8cons.h:7: warning: unused variable `o8p2'
INCLUDE/o8cons.h:7: warning: unused variable `o8p4'
INCLUDE/o8cons.h:7: warning: unused variable `o8p5'
INCLUDE/o8cons.h:7: warning: unused variable `o8p7'
INCLUDE/o8cons.h:7: warning: unused variable `o8p8'
INCLUDE/o8cons.h:7: warning: unused variable `o8p9'
INCLUDE/o8cons.h:8: warning: unused variable `o8c45'
INCLUDE/o8cons.h:8: warning: unused variable `o8tm12'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm10'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm9'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm8'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm7'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm6'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm5'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm4'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm3'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm2'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm1'
INCLUDE/o8cons.h:10: warning: unused variable `o8tp1'
INCLUDE/o8cons.h:10: warning: unused variable `o8tp2'
INCLUDE/o8cons.h:11: warning: unused variable `o8tp3'
INCLUDE/o8cons.h:11: warning: unused variable `o8tp4'
optimize.c: In function `ef':
INCLUDE/o8fuco.h:5: warning: unused variable `o8val'
INCLUDE/o8fuco.h:5: warning: unused variable `o8llow'
INCLUDE/o8fuco.h:5: warning: unused variable `o8lup'
INCLUDE/o8fuco.h:7: warning: unused variable `o8n'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nr'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nres'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nlin'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nonlin'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nstep'
INCLUDE/o8fuco.h:7: warning: unused variable `o8ndualm'
INCLUDE/o8fuco.h:7: warning: unused variable `o8mdualm'
INCLUDE/o8fuco.h:9: warning: unused variable `o8epsmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8tolmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8deldif'
INCLUDE/o8fuco.h:11: warning: unused variable `o8name'
INCLUDE/o8fuco.h:13: warning: unused variable `o8epsdif'
INCLUDE/o8fuco.h:15: warning: unused variable `o8intakt'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te0'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te1'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te2'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te3'
INCLUDE/o8fuco.h:15: warning: unused variable `o8singul'
INCLUDE/o8fuco.h:16: warning: unused variable `o8ident'
INCLUDE/o8fuco.h:16: warning: unused variable `o8eqres'
INCLUDE/o8fuco.h:16: warning: unused variable `o8silent'
INCLUDE/o8fuco.h:16: warning: unused variable `o8analyt'
INCLUDE/o8fuco.h:16: warning: unused variable `o8cold'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icgf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cfincr'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cres'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cgres'
INCLUDE/o8fuco.h:20: warning: unused variable `o8ffuerr'
INCLUDE/o8fuco.h:20: warning: unused variable `o8confuerr'
INCLUDE/o8fuco.h:25: warning: unused variable `o8nh'
INCLUDE/o8fuco.h:25: warning: unused variable `o8ng'
INCLUDE/o8fuco.h:27: warning: unused variable `o8nonlinlist'
INCLUDE/o8fuco.h:29: warning: unused variable `o8gunit'
INCLUDE/o8fuco.h:31: warning: unused variable `o8gconst'
INCLUDE/o8fuco.h:33: warning: unused variable `o8cfuerr'
INCLUDE/o8fuco.h:38: warning: unused variable `o8numSinguls'
optimize.c: In function `egradf':
INCLUDE/o8fuco.h:5: warning: unused variable `o8val'
INCLUDE/o8fuco.h:5: warning: unused variable `o8llow'
INCLUDE/o8fuco.h:5: warning: unused variable `o8lup'
INCLUDE/o8fuco.h:7: warning: unused variable `o8n'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nr'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nres'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nlin'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nonlin'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nstep'
INCLUDE/o8fuco.h:7: warning: unused variable `o8ndualm'
INCLUDE/o8fuco.h:7: warning: unused variable `o8mdualm'
INCLUDE/o8fuco.h:9: warning: unused variable `o8epsmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8tolmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8deldif'
INCLUDE/o8fuco.h:11: warning: unused variable `o8name'
INCLUDE/o8fuco.h:13: warning: unused variable `o8epsdif'
INCLUDE/o8fuco.h:15: warning: unused variable `o8intakt'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te0'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te1'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te2'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te3'
INCLUDE/o8fuco.h:15: warning: unused variable `o8singul'
INCLUDE/o8fuco.h:16: warning: unused variable `o8ident'
INCLUDE/o8fuco.h:16: warning: unused variable `o8eqres'
INCLUDE/o8fuco.h:16: warning: unused variable `o8silent'
INCLUDE/o8fuco.h:16: warning: unused variable `o8analyt'
INCLUDE/o8fuco.h:16: warning: unused variable `o8cold'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icgf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cfincr'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cres'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cgres'
INCLUDE/o8fuco.h:20: warning: unused variable `o8ffuerr'
INCLUDE/o8fuco.h:20: warning: unused variable `o8confuerr'
INCLUDE/o8fuco.h:25: warning: unused variable `o8nh'
INCLUDE/o8fuco.h:25: warning: unused variable `o8ng'
INCLUDE/o8fuco.h:27: warning: unused variable `o8nonlinlist'
INCLUDE/o8fuco.h:29: warning: unused variable `o8gunit'
INCLUDE/o8fuco.h:31: warning: unused variable `o8gconst'
INCLUDE/o8fuco.h:33: warning: unused variable `o8cfuerr'
INCLUDE/o8fuco.h:38: warning: unused variable `o8numSinguls'
optimize.c: In function `econ':
INCLUDE/o8fuco.h:5: warning: unused variable `o8val'
INCLUDE/o8fuco.h:5: warning: unused variable `o8llow'
INCLUDE/o8fuco.h:5: warning: unused variable `o8lup'
INCLUDE/o8fuco.h:7: warning: unused variable `o8n'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nr'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nres'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nlin'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nonlin'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nstep'
INCLUDE/o8fuco.h:7: warning: unused variable `o8ndualm'
INCLUDE/o8fuco.h:7: warning: unused variable `o8mdualm'
INCLUDE/o8fuco.h:9: warning: unused variable `o8epsmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8tolmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8deldif'
INCLUDE/o8fuco.h:11: warning: unused variable `o8name'
INCLUDE/o8fuco.h:13: warning: unused variable `o8epsdif'
INCLUDE/o8fuco.h:15: warning: unused variable `o8intakt'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te0'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te1'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te2'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te3'
INCLUDE/o8fuco.h:15: warning: unused variable `o8singul'
INCLUDE/o8fuco.h:16: warning: unused variable `o8ident'
INCLUDE/o8fuco.h:16: warning: unused variable `o8eqres'
INCLUDE/o8fuco.h:16: warning: unused variable `o8silent'
INCLUDE/o8fuco.h:16: warning: unused variable `o8analyt'
INCLUDE/o8fuco.h:16: warning: unused variable `o8cold'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icgf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cfincr'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cres'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cgres'
INCLUDE/o8fuco.h:20: warning: unused variable `o8ffuerr'
INCLUDE/o8fuco.h:20: warning: unused variable `o8confuerr'
INCLUDE/o8fuco.h:25: warning: unused variable `o8nh'
INCLUDE/o8fuco.h:25: warning: unused variable `o8ng'
INCLUDE/o8fuco.h:27: warning: unused variable `o8nonlinlist'
INCLUDE/o8fuco.h:29: warning: unused variable `o8gunit'
INCLUDE/o8fuco.h:31: warning: unused variable `o8gconst'
INCLUDE/o8fuco.h:33: warning: unused variable `o8cfuerr'
INCLUDE/o8fuco.h:38: warning: unused variable `o8numSinguls'
optimize.c: In function `econgrad':
INCLUDE/o8fuco.h:5: warning: unused variable `o8val'
INCLUDE/o8fuco.h:5: warning: unused variable `o8llow'
INCLUDE/o8fuco.h:5: warning: unused variable `o8lup'
INCLUDE/o8fuco.h:7: warning: unused variable `o8n'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nr'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nres'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nlin'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nonlin'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nstep'
INCLUDE/o8fuco.h:7: warning: unused variable `o8ndualm'
INCLUDE/o8fuco.h:7: warning: unused variable `o8mdualm'
INCLUDE/o8fuco.h:9: warning: unused variable `o8epsmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8tolmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8deldif'
INCLUDE/o8fuco.h:11: warning: unused variable `o8name'
INCLUDE/o8fuco.h:13: warning: unused variable `o8epsdif'
INCLUDE/o8fuco.h:15: warning: unused variable `o8intakt'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te0'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te1'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te2'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te3'
INCLUDE/o8fuco.h:15: warning: unused variable `o8singul'
INCLUDE/o8fuco.h:16: warning: unused variable `o8ident'
INCLUDE/o8fuco.h:16: warning: unused variable `o8eqres'
INCLUDE/o8fuco.h:16: warning: unused variable `o8silent'
INCLUDE/o8fuco.h:16: warning: unused variable `o8analyt'
INCLUDE/o8fuco.h:16: warning: unused variable `o8cold'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icgf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cfincr'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cres'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cgres'
INCLUDE/o8fuco.h:20: warning: unused variable `o8ffuerr'
INCLUDE/o8fuco.h:20: warning: unused variable `o8confuerr'
INCLUDE/o8fuco.h:25: warning: unused variable `o8nh'
INCLUDE/o8fuco.h:25: warning: unused variable `o8ng'
INCLUDE/o8fuco.h:27: warning: unused variable `o8nonlinlist'
INCLUDE/o8fuco.h:29: warning: unused variable `o8gunit'
INCLUDE/o8fuco.h:31: warning: unused variable `o8gconst'
INCLUDE/o8fuco.h:33: warning: unused variable `o8cfuerr'
INCLUDE/o8fuco.h:38: warning: unused variable `o8numSinguls'
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -IINCLUDE -I/usr/local/include    -fpic  -g -O2 -Wall -c posterior.c -o posterior.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -IINCLUDE -I/usr/local/include    -fpic  -g -O2 -Wall -c precalc.c -o precalc.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -IINCLUDE -I/usr/local/include    -fpic  -g -O2 -Wall -c rio.c -o rio.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -IINCLUDE -I/usr/local/include    -fpic  -g -O2 -Wall -c theta.c -o theta.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -IINCLUDE -I/usr/local/include    -fpic  -g -O2 -Wall -c user_eval.c -o user_eval.o
user_eval.c: In function `user_eval':
INCLUDE/o8fuco.h:5: warning: unused variable `o8val'
INCLUDE/o8fuco.h:5: warning: unused variable `o8llow'
INCLUDE/o8fuco.h:5: warning: unused variable `o8lup'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nr'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nres'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nstep'
INCLUDE/o8fuco.h:7: warning: unused variable `o8ndualm'
INCLUDE/o8fuco.h:7: warning: unused variable `o8mdualm'
INCLUDE/o8fuco.h:9: warning: unused variable `o8epsmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8tolmac'
INCLUDE/o8fuco.h:11: warning: unused variable `o8name'
INCLUDE/o8fuco.h:13: warning: unused variable `o8epsdif'
INCLUDE/o8fuco.h:15: warning: unused variable `o8intakt'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te0'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te1'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te2'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te3'
INCLUDE/o8fuco.h:15: warning: unused variable `o8singul'
INCLUDE/o8fuco.h:16: warning: unused variable `o8ident'
INCLUDE/o8fuco.h:16: warning: unused variable `o8eqres'
INCLUDE/o8fuco.h:16: warning: unused variable `o8silent'
INCLUDE/o8fuco.h:16: warning: unused variable `o8cold'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icgf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cfincr'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cres'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cgres'
INCLUDE/o8fuco.h:20: warning: unused variable `o8ffuerr'
INCLUDE/o8fuco.h:20: warning: unused variable `o8confuerr'
INCLUDE/o8fuco.h:25: warning: unused variable `o8nh'
INCLUDE/o8fuco.h:25: warning: unused variable `o8ng'
INCLUDE/o8fuco.h:27: warning: unused variable `o8nonlinlist'
INCLUDE/o8fuco.h:29: warning: unused variable `o8gunit'
INCLUDE/o8fuco.h:31: warning: unused variable `o8gconst'
INCLUDE/o8fuco.h:33: warning: unused variable `o8cfuerr'
INCLUDE/o8fuco.h:38: warning: unused variable `o8numSinguls'
INCLUDE/o8comm.h:12: warning: unused variable `o8runtim'
INCLUDE/o8comm.h:13: warning: unused variable `o8optite'
INCLUDE/o8comm.h:14: warning: unused variable `o8accinf'
INCLUDE/o8comm.h:15: warning: unused variable `o8itstep'
INCLUDE/o8comm.h:15: warning: unused variable `o8phase'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi0'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi1'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsist'
INCLUDE/o8comm.h:17: warning: unused variable `o8psi'
INCLUDE/o8comm.h:17: warning: unused variable `o8psi0'
INCLUDE/o8comm.h:18: warning: unused variable `o8psi1'
INCLUDE/o8comm.h:18: warning: unused variable `o8psist'
INCLUDE/o8comm.h:18: warning: unused variable `o8psimin'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi0'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi1'
INCLUDE/o8comm.h:19: warning: unused variable `o8phimin'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx0'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx1'
INCLUDE/o8comm.h:20: warning: unused variable `o8fxst'
INCLUDE/o8comm.h:20: warning: unused variable `o8fmin'
INCLUDE/o8comm.h:20: warning: unused variable `o8b2n'
INCLUDE/o8comm.h:20: warning: unused variable `o8b2n0'
INCLUDE/o8comm.h:20: warning: unused variable `o8xnorm'
INCLUDE/o8comm.h:20: warning: unused variable `o8x0norm'
INCLUDE/o8comm.h:20: warning: unused variable `o8sig0'
INCLUDE/o8comm.h:20: warning: unused variable `o8dscal'
INCLUDE/o8comm.h:20: warning: unused variable `o8dnorm'
INCLUDE/o8comm.h:20: warning: unused variable `o8d0norm'
INCLUDE/o8comm.h:21: warning: unused variable `o8sig'
INCLUDE/o8comm.h:21: warning: unused variable `o8sigmin'
INCLUDE/o8comm.h:21: warning: unused variable `o8dirder'
INCLUDE/o8comm.h:21: warning: unused variable `o8cosphi'
INCLUDE/o8comm.h:21: warning: unused variable `o8upsim'
INCLUDE/o8comm.h:22: warning: unused variable `o8x'
INCLUDE/o8comm.h:22: warning: unused variable `o8x0'
INCLUDE/o8comm.h:22: warning: unused variable `o8x1'
INCLUDE/o8comm.h:22: warning: unused variable `o8xmin'
INCLUDE/o8comm.h:22: warning: unused variable `o8d'
INCLUDE/o8comm.h:22: warning: unused variable `o8d0'
INCLUDE/o8comm.h:23: warning: unused variable `o8dd'
INCLUDE/o8comm.h:23: warning: unused variable `o8difx'
INCLUDE/o8comm.h:23: warning: unused variable `o8resmin'
INCLUDE/o8comm.h:25: warning: unused variable `o8gradf'
INCLUDE/o8comm.h:25: warning: unused variable `o8gfn'
INCLUDE/o8comm.h:25: warning: unused variable `o8qgf'
INCLUDE/o8comm.h:25: warning: unused variable `o8gphi0'
INCLUDE/o8comm.h:25: warning: unused variable `o8gphi1'
INCLUDE/o8comm.h:26: warning: unused variable `o8gres'
INCLUDE/o8comm.h:26: warning: unused variable `o8gresn'
INCLUDE/o8comm.h:28: warning: unused variable `o8perm'
INCLUDE/o8comm.h:28: warning: unused variable `o8perm1'
INCLUDE/o8comm.h:28: warning: unused variable `o8colno'
INCLUDE/o8comm.h:28: warning: unused variable `o8rank'
INCLUDE/o8comm.h:29: warning: unused variable `o8qr'
INCLUDE/o8comm.h:29: warning: unused variable `o8betaq'
INCLUDE/o8comm.h:29: warning: unused variable `o8diag'
INCLUDE/o8comm.h:30: warning: unused variable `o8cscal'
INCLUDE/o8comm.h:31: warning: unused variable `o8colle'
INCLUDE/o8comm.h:35: warning: unused variable `o8a'
INCLUDE/o8comm.h:35: warning: unused variable `o8scalm'
INCLUDE/o8comm.h:35: warning: unused variable `o8scalm2'
INCLUDE/o8comm.h:35: warning: unused variable `o8diag0'
INCLUDE/o8comm.h:35: warning: unused variable `o8matsc'
INCLUDE/o8comm.h:37: warning: unused variable `o8violis'
INCLUDE/o8comm.h:37: warning: unused variable `o8alist'
INCLUDE/o8comm.h:37: warning: unused variable `o8bind'
INCLUDE/o8comm.h:38: warning: unused variable `o8bind0'
INCLUDE/o8comm.h:38: warning: unused variable `o8aalist'
INCLUDE/o8comm.h:38: warning: unused variable `o8clist'
INCLUDE/o8comm.h:40: warning: unused variable `o8u'
INCLUDE/o8comm.h:40: warning: unused variable `o8u0'
INCLUDE/o8comm.h:41: warning: unused variable `o8w'
INCLUDE/o8comm.h:41: warning: unused variable `o8w1'
INCLUDE/o8comm.h:41: warning: unused variable `o8res'
INCLUDE/o8comm.h:42: warning: unused variable `o8res0'
INCLUDE/o8comm.h:42: warning: unused variable `o8res1'
INCLUDE/o8comm.h:43: warning: unused variable `o8resst'
INCLUDE/o8comm.h:43: warning: unused variable `o8scf'
INCLUDE/o8comm.h:43: warning: unused variable `o8scf0'
INCLUDE/o8comm.h:44: warning: unused variable `o8yu'
INCLUDE/o8comm.h:44: warning: unused variable `o8slack'
INCLUDE/o8comm.h:44: warning: unused variable `o8infeas'
INCLUDE/o8comm.h:44: warning: unused variable `o8work'
INCLUDE/o8comm.h:46: warning: unused variable `o8iterma'
INCLUDE/o8comm.h:47: warning: unused variable `o8del'
INCLUDE/o8comm.h:47: warning: unused variable `o8del0'
INCLUDE/o8comm.h:47: warning: unused variable `o8del01'
INCLUDE/o8comm.h:47: warning: unused variable `o8delmin'
INCLUDE/o8comm.h:47: warning: unused variable `o8tau0'
INCLUDE/o8comm.h:47: warning: unused variable `o8tau'
INCLUDE/o8comm.h:47: warning: unused variable `o8ny'
INCLUDE/o8comm.h:48: warning: unused variable `o8smalld'
INCLUDE/o8comm.h:48: warning: unused variable `o8smallw'
INCLUDE/o8comm.h:48: warning: unused variable `o8rho'
INCLUDE/o8comm.h:48: warning: unused variable `o8rho1'
INCLUDE/o8comm.h:48: warning: unused variable `o8eta'
INCLUDE/o8comm.h:48: warning: unused variable `o8epsx'
INCLUDE/o8comm.h:48: warning: unused variable `o8c1d'
INCLUDE/o8comm.h:49: warning: unused variable `o8scfmax'
INCLUDE/o8comm.h:49: warning: unused variable `o8updmy0'
INCLUDE/o8comm.h:49: warning: unused variable `o8tauqp'
INCLUDE/o8comm.h:49: warning: unused variable `o8taufac'
INCLUDE/o8comm.h:49: warning: unused variable `o8taumax'
INCLUDE/o8comm.h:51: warning: unused variable `o8alpha'
INCLUDE/o8comm.h:51: warning: unused variable `o8beta'
INCLUDE/o8comm.h:51: warning: unused variable `o8theta'
INCLUDE/o8comm.h:51: warning: unused variable `o8sigsm'
INCLUDE/o8comm.h:51: warning: unused variable `o8sigla'
INCLUDE/o8comm.h:51: warning: unused variable `o8delta'
INCLUDE/o8comm.h:51: warning: unused variable `o8stptrm'
INCLUDE/o8comm.h:52: warning: unused variable `o8delta1'
INCLUDE/o8comm.h:52: warning: unused variable `o8stmaxl'
INCLUDE/o8comm.h:54: warning: unused variable `o8level'
INCLUDE/o8comm.h:55: warning: unused variable `o8clow'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastdw'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastup'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastch'
INCLUDE/o8comm.h:57: warning: unused variable `o8prou'
INCLUDE/o8comm.h:57: warning: unused variable `o8meu'
INCLUDE/o8comm.h:59: warning: unused variable `o8ug'
INCLUDE/o8comm.h:59: warning: unused variable `o8og'
INCLUDE/o8comm.h:61: warning: unused variable `o8low'
INCLUDE/o8comm.h:61: warning: unused variable `o8up'
INCLUDE/o8comm.h:61: warning: unused variable `o8big'
INCLUDE/o8comm.h:63: warning: unused variable `o8nreset'
INCLUDE/o8comm.h:65: warning: unused variable `o8xst'
INCLUDE/o8comm.h:68: warning: unused variable `o8epsphi'
INCLUDE/o8fint.h:23: warning: unused variable `o8bloc'
INCLUDE/o8fint.h:23: warning: unused variable `o8corr'
INCLUDE/o8cons.h:4: warning: unused variable `o8two'
INCLUDE/o8cons.h:5: warning: unused variable `o8five'
INCLUDE/o8cons.h:5: warning: unused variable `o8six'
INCLUDE/o8cons.h:6: warning: unused variable `o8twom2'
INCLUDE/o8cons.h:6: warning: unused variable `o8twop4'
INCLUDE/o8cons.h:6: warning: unused variable `o8twop11'
INCLUDE/o8cons.h:6: warning: unused variable `o8onep3'
INCLUDE/o8cons.h:7: warning: unused variable `o8onep5'
INCLUDE/o8cons.h:7: warning: unused variable `o8p2'
INCLUDE/o8cons.h:7: warning: unused variable `o8p5'
INCLUDE/o8cons.h:7: warning: unused variable `o8p7'
INCLUDE/o8cons.h:7: warning: unused variable `o8p8'
INCLUDE/o8cons.h:7: warning: unused variable `o8p9'
INCLUDE/o8cons.h:8: warning: unused variable `o8tm12'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm10'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm9'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm8'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm7'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm6'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm5'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm4'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm3'
INCLUDE/o8cons.h:10: warning: unused variable `o8tp1'
INCLUDE/o8cons.h:10: warning: unused variable `o8tp2'
INCLUDE/o8cons.h:11: warning: unused variable `o8tp3'
INCLUDE/o8cons.h:11: warning: unused variable `o8tp4'
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -IINCLUDE -I/usr/local/include    -fpic  -g -O2 -Wall -c xml.c -o xml.o
gcc -std=gnu99 -shared -L/usr/local/lib -o cosmo.so alloc.o back.o constraints.o cosmo.o cregistration.o donlp2.o estarts.o eval.o fit.o free.o init.o io.o lstarts.o matLib.o newx.o optimize.o posterior.o precalc.o rio.o theta.o user_eval.o xml.o   -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
Loading required package: seqLogo
Loading required package: grid
** help
 >>> Building/Updating help pages for package 'cosmo'
     Formats: text html latex example 
  addCon                            text    html    latex   example
  align-class                       text    html    latex   example
  bfile2tmat                        text    html    latex   example
  bgModel                           text    html    latex   example
  boundCon-class                    text    html    latex   example
  constraintSet-class               text    html    latex   example
  cosmo-class                       text    html    latex   example
  cosmo                             text    html    latex   example
  intInfo-class                     text    html    latex   example
  license.cosmo                     text    html    latex   example
  makeBoundCon                      text    html    latex   example
  makeConSet                        text    html    latex   example
  makePalCon                        text    html    latex   example
  makePosFreqCon                    text    html    latex   example
  makeShapeCon                      text    html    latex   example
  makeShapeDiffCon                  text    html    latex   example
  makeSubMotifCon                   text    html    latex   example
  motifPWM                          text    html    latex   example
  palCon-class                      text    html    latex   example
  posFreqCon-class                  text    html    latex   example
  postProbs-class                   text    html    latex   example
  readConFile                       text    html    latex   example
  rseq                              text    html    latex   example
  shapeCon-class                    text    html    latex   example
  shapeDiffCon-class                text    html    latex   example
  simScore                          text    html    latex   example
  subMotifCon-class                 text    html    latex   example
  transMats                         text    html    latex   example
  writeConFile                      text    html    latex   example
** building package indices ...
* DONE (cosmo)
* creating vignettes ... OK
* cleaning src
* running cleanup
rm: cannot remove `src/*.o': No such file or directory
rm: cannot remove `src/*.so': No such file or directory
rm: cannot remove `Makevars': No such file or directory
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'cosmo_1.4.0.tar.gz'